insB-7 2:Gene: Difference between revisions

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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=662 Genobase]
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=662 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:9H9|9H9]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=663 Genobase]
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PMID:3038334  
PMID:3038334  
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est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> <br />  
est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> <br />  
Synonyms:zjj-202::Tn10, zji-202::Tn10  
Synonyms:zjj-202::Tn10, zji-202::Tn10  
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[[:Category:Kohara_Phage:9H9|9H9]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=663 Genobase]
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PMID:3038334


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-10570 EcoCyc:G0-10570]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b0988 EcoliGenExpDB:b0988]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=Z5491 ECOO157CYC:Z5491]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4719 EchoBASE:EB4719]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C4498 ECOL199310CYC:C4498]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000075&formSubmitReturn=1 ASAP:ABE-0000075]
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|-
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000906&formSubmitReturn=1 ASAP:ABE-0000906]
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|-
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000948&formSubmitReturn=1 ASAP:ABE-0000948]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003338&formSubmitReturn=1 ASAP:ABE-0003338]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006308&formSubmitReturn=1 ASAP:ABE-0006308]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0011251&formSubmitReturn=1 ASAP:ABE-0011251]
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|-
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0285084&formSubmitReturn=1 ASAP:ABE-0285084]
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|-
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0285085&formSubmitReturn=1 ASAP:ABE-0285085]
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Revision as of 20:29, 21 September 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

insB-7_2

Mnemonic
Synonyms

insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1[1][2][3]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

0.43 minutes 

MG1655: 20314..19811
<gbrowseImage> name=NC_000913:19811..20314 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1322970..1323473
<gbrowseImage> name=NC_012967:1322970..1323473 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 353279..353782
<gbrowseImage> name=NC_012967:353279..353782 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 263041..263544
<gbrowseImage> name=NC_012967:263041..263544 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4550928..4551431
<gbrowseImage> name=NC_012967:4550928..4551431 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4521586..4522089
<gbrowseImage> name=NC_012967:4521586..4522089 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4505357..4505860
<gbrowseImage> name=NC_012967:4505357..4505860 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4478031..4478534
<gbrowseImage> name=NC_012759:4478031..4478534 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 994837..995340
<gbrowseImage> name=NC_012759:994837..995340 source=BW2952 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1193864..1194367
<gbrowseImage> name=NC_012967:1193864..1194367 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 23540..24043
<gbrowseImage> name=NC_012967:23540..24043 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 376764..377267
<gbrowseImage> name=NC_012967:376764..377267 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 546947..547450
<gbrowseImage> name=NC_012967:546947..547450 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 589570..590073
<gbrowseImage> name=NC_012967:589570..590073 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 619132..619635
<gbrowseImage> name=NC_012967:619132..619635 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 633993..634496
<gbrowseImage> name=NC_012967:633993..634496 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3433477..3433980
<gbrowseImage> name=NC_012967:3433477..3433980 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3023960..3024463
<gbrowseImage> name=NC_012967:3023960..3024463 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2822202..2822705
<gbrowseImage> name=NC_012967:2822202..2822705 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2682857..2683360
<gbrowseImage> name=NC_012967:2682857..2683360 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 241506..242009
<gbrowseImage> name=NC_012967:241506..242009 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2618278..2618781
<gbrowseImage> name=NC_012967:2618278..2618781 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2407457..2407960
<gbrowseImage> name=NC_012967:2407457..2407960 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2262755..2263258
<gbrowseImage> name=NC_012967:2262755..2263258 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2143079..2143582
<gbrowseImage> name=NC_012967:2143079..2143582 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2128849..2129352
<gbrowseImage> name=NC_012967:2128849..2129352 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1460409..1460912
<gbrowseImage> name=NC_012967:1460409..1460912 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1973521..1974024
<gbrowseImage> name=NC_012967:1973521..1974024 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2034341..2034844
<gbrowseImage> name=NC_012967:2034341..2034844 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3741213..3741716
<gbrowseImage> name=NC_012967:3741213..3741716 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1178223..1178726
<gbrowseImage> name=NC_012759:1178223..1178726 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 19811..20314
<gbrowseImage> name=NC_012759:19811..20314 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3470194..3470697
<gbrowseImage> name=NC_012759:3470194..3470697 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 952218..952721
<gbrowseImage> name=NC_012759:952218..952721 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 20314..19811
<gbrowseImage> name=AC_000091:19811..20314 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

6 minutes 

MG1655: 278905..278402
<gbrowseImage> name=NC_000913:278402..278905 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 278905..278402
<gbrowseImage> name=AC_000091:278402..278905 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

6.25 minutes 

MG1655: 290376..289873
<gbrowseImage> name=NC_000913:289873..290376 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 290376..289873
<gbrowseImage> name=AC_000091:289873..290376 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

22.61 minutes 

MG1655: 1049250..1049753
<gbrowseImage> name=NC_000913:1049250..1049753 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1050449..1050952
<gbrowseImage> name=AC_000091:1050449..1050952 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

42.6 minutes 

MG1655: 1977045..1976542
<gbrowseImage> name=NC_000913:1976542..1977045 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 0..0
<gbrowseImage> name=AC_000091:0..0 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

77.2 minutes 

MG1655: 3581700..3582203
<gbrowseImage> name=NC_000913:3581700..3582203 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4056738..4056235
<gbrowseImage> name=AC_000091:4056235..4056738 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.35 minutes 

MG1655: 4516744..4517037
<gbrowseImage> name=NC_000913:4516744..4517037 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523401..4523694
<gbrowseImage> name=AC_000091:4523401..4523694 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.36 minutes 

MG1655: 4517038..4517247
<gbrowseImage> name=NC_000913:4517038..4517247 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523695..4523904
<gbrowseImage> name=AC_000091:4523695..4523904 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

 

MG1655: 4516744..4517247
<gbrowseImage> name=NC_000913:4516744..4517247 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523401..4523904
<gbrowseImage> name=AC_000091:4523401..4523904 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

 

MG1655: 0..0
<gbrowseImage> name=NC_000913:0..0 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2411976..2411473
<gbrowseImage> name=AC_000091:2411473..2411976 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

6H3

Kohara Phage

Genobase

PMID:3038334[5]

22B12

Kohara Phage

Genobase

PMID:3038334[5]

5A5

Kohara Phage

Genobase

PMID:3038334[5]

3C7

Kohara Phage

Genobase

PMID:3038334[5]

3C7

Kohara Phage

Genobase

PMID:3038334[5]

21C10

Kohara Phage

Genobase

PMID:3038334[5]

4H11

Kohara Phage

Genobase

PMID:3038334[5]

2F1

Kohara Phage

Genobase

PMID:3038334[5]

9C2

Kohara Phage

Genobase

PMID:3038334[5]

10F5

Kohara Phage

Genobase

PMID:3038334[5]

16A5

Kohara Phage

Genobase

PMID:3038334[5]

7G7

Kohara Phage

Genobase

PMID:3038334[5]

9H9

Kohara Phage

Genobase

PMID:3038334[5]

zjf-920::Tn10

Linked marker

CAG12019 = CGSC7484[6]

est. P1 cotransduction: 1% [7]
Synonyms:zjh-901::Tn10, zjg-920::Tn10

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[6]

est. P1 cotransduction: 1% [7]
Synonyms:zjj-202::Tn10, zji-202::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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