atpG:Gene: Difference between revisions

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{{GBrowseLink|ecoli_W3110|AC_000091|3717416|3720279|GBrowse(W3110)}}  
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Revision as of 19:42, 17 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

atpG

Mnemonic

ATP

Synonyms

ECK3726, b3733, JW3711, papC, uncG, unc[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

84.39 minutes, 84.39 minutes 

MG1655: 3916288..3915425
<gbrowseImage> name=NC_000913:3915425..3916288 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3878631..3877768
<gbrowseImage> name=NC_012967:3877768..3878631 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3803758..3804621
<gbrowseImage> name=NC_012759:3803758..3804621 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3718416..3719279
<gbrowseImage> name=AC_000091:3718416..3719279 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4013872..4013009
<gbrowseImage> name=NC_010473:4013009..4013872 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3915428

Edman degradation

PMID:7508444[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔatpG (Keio:JW3711)

deletion

deletion

PMID:16738554[3]

Shigen

atpG428

CGSC:7266


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3711

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCGCCGGCGCAAAAGAGATACG

Primer 2:CCAACCGCGGCGGCCCCCGAGAC

zid-501::Tn10

Linked marker

CAG18499 = CGSC7458[5]

est. P1 cotransduction: 17% [6]

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[5]

est. P1 cotransduction: 60% [6]
Synonyms:zie-296::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10104

EchoBASE (EcoliWiki Page)

EchoBASE:EB0102

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3733

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4659

EcoGene (EcoliWiki Page)

EcoGene:EG10104

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:ATPG

CGSC (EcoliWiki Page)

CGSC:27

ASAP (EcoliWikiPage)

ASAP:ABE-0012211


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Tang, C et al. (1994) Structure of the gamma subunit of Escherichia coli F1 ATPase probed in trypsin digestion and biotin-avidin binding studies. J. Biol. Chem. 269 4467-72 PubMed
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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