atpG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpG

Synonyms

F1 sector of membrane-bound ATP synthase, gamma subunit[1], B3733[2][1], Unc[2][1], UncG[2][1], PapC[2][1], AtpG[2][1] , ECK3726, JW3711, papC, uncG, b3733

Product description

ATP synthase, F1 complex, γ subunit[2][3];

Component of ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit gamma, membrane-bound, F1 sector[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00815

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

PMID:2863270[5]

IMP: Inferred from Mutant Phenotype

C

Component of F1 ATP synthase, with gene products of uncA (alpha), uncD (beta), uncH (delta) and uncC (epsilon) - for review see Chapter 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

PMID:2863270[5]

IDA: Inferred from Direct Assay

F

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000131

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726[6]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000131

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0139

C

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00815

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000131

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000131

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ATP synthase, F1 complex

could be indirect

Protein

atpA

PMID:15690043[7]

Experiment(s):EBI-878843, EBI-881946

Protein

atpC

PMID:15690043[7]

Experiment(s):EBI-878843, EBI-881946

Protein

atpD

PMID:15690043[7]

Experiment(s):EBI-878843

Protein

rplW

PMID:15690043[7]

Experiment(s):EBI-881946

Protein

recJ

PMID:19402753[8]

MALDI(Z-score):22.340308

Protein

recQ

PMID:19402753[8]

MALDI(Z-score):26.376499

Protein

atpD

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

atpC

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

atpA

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

Subunits of ATP synthase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]

Cytoplasm

PMID:7508444[9], PMID:2900236[10]

EchoLocation:atpG


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAGAKEIRSK IASVQNTQKI TKAMEMVAAS KMRKSQDRMA ASRPYAETMR KVIGHLAHGN
LEYKHPYLED RDVKRVGYLV VSTDRGLCGG LNINLFKKLL AEMKTWTDKG VQCDLAMIGS
KGVSFFNSVG GNVVAQVTGM GDNPSLSELI GPVKVMLQAY DEGRLDKLYI VSNKFINTMS
QVPTISQLLP LPASDDDDLK HKSWDYLYEP DPKALLDTLL RRYVESQVYQ GVVENLASEQ
AARMVAMKAA TDNGGSLIKE LQLVYNKARQ ASITQELTEI VSGAAAV
Length

287

Mol. Wt

31.577 kDa

pI

9.1 (calculated)

Extinction coefficient

27,390 - 27,640 (calc based on 11 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..287

PF00231 ATP synthase

PMID:19920124[11]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131601

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948243

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012211

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ABA6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10104

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10104

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948243

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000100

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0102

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Klionsky, DJ & Simoni, RD (1985) Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli. J. Biol. Chem. 260 11200-6 PubMed
  6. ↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Tang, C et al. (1994) Structure of the gamma subunit of Escherichia coli F1 ATPase probed in trypsin digestion and biotin-avidin binding studies. J. Biol. Chem. 269 4467-72 PubMed
  10. ↑ McCarn, DF et al. (1988) Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120. J. Bacteriol. 170 3448-58 PubMed
  11. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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