yafY:Gene: Difference between revisions
Adding section & Genetic interactions table to Gene pages. |
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MG1655: 266191..265334<br /><gbrowseImage> | MG1655: 266191..265334<br /><gbrowseImage> | ||
name=NC_000913:265334..266191 | name=NC_000913:265334..266191 | ||
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W3110: 266191..265334<br /><gbrowseImage> | W3110: 266191..265334<br /><gbrowseImage> | ||
name=AC_000091:265334..266191 | name=AC_000091:265334..266191 | ||
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DH10B: 239881..239438<br /><gbrowseImage> | DH10B: 239881..239438<br /><gbrowseImage> | ||
name=NC_010473:239438..239881 | name=NC_010473:239438..239881 | ||
source= | source=MG1655_DH10B | ||
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Revision as of 22:05, 24 June 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
yafY |
|---|---|
| Mnemonic |
Systematic nomenclature |
| Synonyms |
ECK0253, b0251, JW0240[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
5.72 minutes |
MG1655: 266191..265334 |
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NC_012759: 265333..265776 |
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|
W3110 |
|
W3110: 266191..265334 |
||
|
DH10B: 239881..239438 |
||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔyafY (Keio:JW0240) |
deletion |
deletion |
|||||
|
yafY::Tn5KAN-I-SceI (FB20102) |
Insertion at nt 503 in Plus orientation |
contains pKD46 | |||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0240 |
Plasmid clone |
Status:Clone OK Primer 1:GCCACACAGGCAGAACGCCGCCA Primer 2:CCTTCCTGATTGTCAGGGTTCGA | |
|
Linked marker |
est. P1 cotransduction: 83% [6] | ||
|
Linked marker |
est. P1 cotransduction: % [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).