intD:Gene: Difference between revisions
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MG1655: 565201..564038<br /> | MG1655: 565201..564038<br /><gbrowseImage> | ||
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10507 EcoCyc] | *[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10507 EcoCyc] | ||
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NC_012967: 538092..536929<br /> | NC_012967: 538092..536929<br /><gbrowseImage> | ||
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{{GBrowseLink|REL606|NC_012967|536929|538092|GBrowse (REL606)}} | {{GBrowseLink|REL606|NC_012967|536929|538092|GBrowse (REL606)}} | ||
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{{GBrowseLink|BW2952|012759|466798|NC_467961|GBrowse (BW2952)}} | {{GBrowseLink|BW2952|012759|466798|NC_467961|GBrowse (BW2952)}} | ||
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W3110: 565201..564038<br /> | W3110: 565201..564038<br /><gbrowseImage> | ||
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{{GBrowseLink|ecoli_W3110|AC_000091|563038|566201|GBrowse(W3110)}} | {{GBrowseLink|ecoli_W3110|AC_000091|563038|566201|GBrowse(W3110)}} | ||
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{{GBrowseLink|ecoli_DH10B|NC_010473|501044|506859|GBrowse(DH10B)}} | {{GBrowseLink|ecoli_DH10B|NC_010473|501044|506859|GBrowse(DH10B)}} | ||
Revision as of 21:05, 26 July 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
intD |
|---|---|
| Mnemonic |
Integrase |
| Synonyms |
ECK0530, b0537, JW0525, int[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
12.16 minutes |
MG1655: 565201..564038 |
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NC_012967: 538092..536929 |
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NC_012759: 466798..467961 |
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|
W3110 |
|
W3110: 565201..564038 |
||
|
DH10B: 504533..503370 |
||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔintD (Keio:JW0525) |
deletion |
deletion |
|||||
|
At position 524 in Minus orientation, does not contain plasmid pKD46. | |||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0525 |
Plasmid clone |
Status:Clone OK Primer 1:GCCTCACTCTTCCGCAGAAATGA Primer 2:CCCGCCTTCTTTATATCCTCCAT | |
|
Linked marker |
est. P1 cotransduction: 66% [6] | ||
|
Linked marker |
est. P1 cotransduction: 1% [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).