envC:Gene: Difference between revisions

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!align=left |Standard name
!align=left {{table_heading_style}} |Standard name
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''envC''  
''envC''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Envelope
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK3603, b3613, JW5646, yibP, slm11''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK3603, b3613, JW5646, yibP, slm11''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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!|Feature type!!Location!!Description
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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Revision as of 21:07, 25 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

envC

Mnemonic

Envelope

Synonyms

ECK3603, b3613, JW5646, yibP, slm11[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

81.58 minutes 

MG1655: 3784861..3786120
gbrowse_img.php?coord=3784861..3786120&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3727604..3728863
gbrowse_img.php?coord=3727604..3728863&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 3853577..3852318
gbrowse_img.php?coord=3852318..3853577&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 3882438..3883697
gbrowse_img.php?coord=3882438..3883697&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔenvC (Keio:JW5646)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC11498[4]

yibP

PMID:12519969[5]

ASAP

At position 1087 in Plus orientation, does not contain plasmid pKD46.
ASAP strain name: FB21343

yibP

PMID:12519969[5]

ASAP

At position 1087 in Plus orientation, contains plasmid pKD46.
ASAP strain name: FB21344

envC61

CGSC:11209

ΔenvC725::kan

PMID:16738554[3]

CGSC:100720

ΔenvC

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔnlpD

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔyebA

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔygeR

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔnlpD ΔyebA

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔnlpD ΔygeR

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔyebA ΔygeR

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]

ΔenvC ΔyebA ΔygeR ΔnlpD

deletion

deletion

Cell Shape

Defect in Cell Separation

PMID:19525345[6]


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Notes

In envC mutants, constriction of the OM lags behind the IM and the FtsZ ring.

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5646

Plasmid clone

Shigen

PMID:16769691[7]

Status:Clone OK

Primer 1:GCCACACGtGCCGTGAAACCGCG

Primer 2:CCTCTTCCCAACCACGGCTGTGG

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[4]

est. P1 cotransduction: % [8]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[4]

est. P1 cotransduction: 16% [8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12297

EchoBASE (EcoliWiki Page)

EchoBASE:EB2205

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3613

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4439

EcoGene (EcoliWiki Page)

EcoGene:EG12297

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YIBP

ASAP (EcoliWikiPage)

ASAP:ABE-0011820


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Uehara, T et al. (2009) LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli. J. Bacteriol. 191 5094-107 PubMed
  7. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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