envC:Gene: Difference between revisions
BatchPageAppend.php edit. |
Fixing zoom on GBrowse image. |
||
| Line 74: | Line 74: | ||
81.58 minutes | 81.58 minutes | ||
| | | | ||
MG1655: 3784861..3786120<br />{{GBrowseFigureByCoord| | MG1655: 3784861..3786120<br />{{GBrowseFigureByCoord|3784861|3786120|ecoli|MG1655}} | ||
| | | | ||
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12297 EcoCyc] | *[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12297 EcoCyc] | ||
| Line 88: | Line 88: | ||
| | ||
| | | | ||
W3110: 3853577..3852318<br />{{GBrowseFigureByCoord| | W3110: 3853577..3852318<br />{{GBrowseFigureByCoord|3852318|3853577|ecoli_W3110|W3110}} | ||
| | | | ||
{{GBrowseLink|ecoli_W3110|AC_000091|3851318|3854577|GBrowse(W3110)}} | {{GBrowseLink|ecoli_W3110|AC_000091|3851318|3854577|GBrowse(W3110)}} | ||
| Line 99: | Line 99: | ||
| | | | ||
DH10B: 3882438..3883697<br />{{GBrowseFigureByCoord| | DH10B: 3882438..3883697<br />{{GBrowseFigureByCoord|3882438|3883697|ecoli_DH10B|DH10B}} | ||
| | | | ||
{{GBrowseLink|ecoli_DH10B|NC_010473|3879920|3886215|GBrowse(DH10B)}} | {{GBrowseLink|ecoli_DH10B|NC_010473|3879920|3886215|GBrowse(DH10B)}} | ||
Revision as of 23:22, 12 December 2009
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
envC |
|---|---|
| Mnemonic | |
| Synonyms | |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
81.58 minutes |
MG1655: 3784861..3786120 |
||
|
W3110 |
|
W3110: 3853577..3852318 |
||
|
DH10B: 3882438..3883697 |
||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔenvC (Keio:JW5646) |
deletion |
deletion |
|||||
|
At position 1087 in Plus orientation, does not contain plasmid pKD46. | |||||||
|
At position 1087 in Plus orientation, contains plasmid pKD46. | |||||||
|
envC61 |
|||||||
|
ΔenvC725::kan |
|||||||
|
ΔenvC |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔnlpD |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔyebA |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔygeR |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔnlpD ΔyebA |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔnlpD ΔygeR |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔyebA ΔygeR |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
|||
|
ΔenvC ΔyebA ΔygeR ΔnlpD |
deletion |
deletion |
Cell Shape |
Defect in Cell Separation |
| ||
| edit table |
Notes
In envC mutants, constriction of the OM lags behind the IM and the FtsZ ring.
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW5646 |
Plasmid clone |
Status:Clone OK Primer 1:GCCACACGtGCCGTGAAACCGCG Primer 2:CCTCTTCCCAACCACGGCTGTGG | |
|
zhg-50::Tn10 |
Linked marker |
est. P1 cotransduction: % [8] | |
|
zic-4901::Tn10 |
Linked marker |
est. P1 cotransduction: 16% [8] | |
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Uehara, T et al. (2009) LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli. J. Bacteriol. 191 5094-107 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).