accC:Gene: Difference between revisions
touch |
touch |
||
| Line 128: | Line 128: | ||
| | | | ||
W3110: 3405772..3407121<br /><gbrowseImage> | W3110: 3405772..3407121<br /><gbrowseImage> | ||
name= | name=NC_007779:3405772..3407121 | ||
source=W3110 | source=W3110 | ||
preset=GeneLocation | preset=GeneLocation | ||
| Line 134: | Line 134: | ||
| | | | ||
{{GBrowseLink|W3110| | {{GBrowseLink|W3110|NC_007779|3404772|3408121|GBrowse(W3110)}} | ||
| | | | ||
{{GBrowseFastaLink|W3110| | {{GBrowseFastaLink|W3110|NC_007779|3405772|3407121|FASTA Dump}} | ||
|- | |- | ||
| | | | ||
| Line 430: | Line 430: | ||
|- | |- | ||
| | | | ||
[[RegulonDB]] | |||
| | | | ||
RegulonDB:ECK120000270 | |||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | ''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | ||
|- | |- | ||
| | | | ||
[[ | [http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]]) | ||
| | | | ||
[http://www.ncbi.nlm.nih.gov/gene?term=947761 GeneID:947761] | |||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
Latest revision as of 20:46, 19 September 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
accC |
|---|---|
| Mnemonic |
Acetyl-CoA carboxylase |
| Synonyms |
ECK3243, b3256, JW3224[1], fabG, JW3224 |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_012759: 3291087..3292436 |
||||
|
MG1655 |
73.37 minutes |
MG1655: 3403939..3405288 |
||
|
NC_012967: 3333808..3335157 |
||||
|
W3110 |
|
W3110: 3405772..3407121 |
||
|
DH10B: 3501684..3503033 |
||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
3403939 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
accCE23R |
E23R |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accCF363A |
F363A |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accCR366E |
R366E |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accCR19E |
R19E |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accC ++ |
Overexpression |
Increase Acetyle COA Carboxylase activity upon over expression. |
See Table 1. | ||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3224 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCTGGATAAAATTGTTATTGC Primer 2:CCTTTTTCCTGAAGACCGAGTTT | |
|
Kohara Phage |
|||
|
Kohara Phage |
|||
|
Linked marker |
est. P1 cotransduction: 18% [9] | ||
|
Linked marker |
est. P1 cotransduction: 69% [9] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Li, SJ & Cronan, JE Jr (1992) The gene encoding the biotin carboxylase subunit of Escherichia coli acetyl-CoA carboxylase. J. Biol. Chem. 267 855-63 PubMed
- ↑ Kondo, H et al. (1991) Acetyl-CoA carboxylase from Escherichia coli: gene organization and nucleotide sequence of the biotin carboxylase subunit. Proc. Natl. Acad. Sci. U.S.A. 88 9730-3 PubMed
- ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
- ↑ Davis, MS et al. (2000) Overproduction of acetyl-CoA carboxylase activity increases the rate of fatty acid biosynthesis in Escherichia coli. J. Biol. Chem. 275 28593-8 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 8.0 8.1 CGSC: The Coli Genetics Stock Center
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).