dmlR:Gene: Difference between revisions

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{{Tab|Quickview|dmlR}}{{Tab On|Gene|dmlR}}{{Tab|Gene Product(s)|dmlR}}{{Tab|Expression|dmlR}}{{Tab|Evolution|dmlR}}{{Tab|On One Page|dmlR}}{{TabsBottom}}
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!align=left {{table_heading_style}} |Standard name
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''yeaT''
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''ECK1797, b1799, JW1788''<ref name='LIB:Riley_2006'/>
''ECK1797, b1799, JW1788''<ref name='LIB:Riley_2006'/>, yeaT''
''dmlR''<ref name='PMID:20233924'/>


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Revision as of 21:18, 30 July 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

dmlR

Mnemonic

Systematic nomenclature

Synonyms

ECK1797, b1799, JW1788[1], yeaT

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

40.5 minutes 

MG1655: 1879833..1878910
<gbrowseImage> name=NC_000913:1878910..1879833 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1860387..1859464
<gbrowseImage> name=NC_012967:1859464..1860387 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1770969..1771892
<gbrowseImage> name=NC_012759:1770969..1771892 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1883523..1882600
<gbrowseImage> name=AC_000091:1882600..1883523 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1970404..1969481
<gbrowseImage> name=NC_010473:1969481..1970404 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyeaT (Keio:JW1788)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC9499[3]

ΔyeaT::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[4]

ΔyeaT::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[4]

ΔyeaT724::kan

PMID:16738554[2]

CGSC:104396


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1788

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCAATAATTTACCGCTGCTGAA

Primer 2:CCGGCATGCTCCAGTGAAAAATT

zea-225::Tn10

Linked marker

CAG18465 = CGSC7388[3]

est. P1 cotransduction: 73% [6]
Synonyms:zdj-225::Tn10

eda-51::Tn10

Linked marker

CAG18486 = CGSC7392[3]

est. P1 cotransduction: 9% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6985

EchoBASE (EcoliWiki Page)

EchoBASE:EB3279

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1799

EcoGene (EcoliWiki Page)

EcoGene:EG13506

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YEAT

ASAP (EcoliWikiPage)

ASAP:ABE-0005987


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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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