chbF:Gene: Difference between revisions
Adding section & Genetic interactions table to Gene pages. |
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MG1655: 1816524..1815172<br /><gbrowseImage> | MG1655: 1816524..1815172<br /><gbrowseImage> | ||
name=NC_000913:1815172..1816524 | name=NC_000913:1815172..1816524 | ||
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W3110: 1820214..1818862<br /><gbrowseImage> | W3110: 1820214..1818862<br /><gbrowseImage> | ||
name=AC_000091:1818862..1820214 | name=AC_000091:1818862..1820214 | ||
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DH10B: 1907095..1905743<br /><gbrowseImage> | DH10B: 1907095..1905743<br /><gbrowseImage> | ||
name=NC_010473:1905743..1907095 | name=NC_010473:1905743..1907095 | ||
source= | source=MG1655_DH10B | ||
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Revision as of 22:23, 24 June 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
chbF |
|---|---|
| Mnemonic |
Chitobiose |
| Synonyms |
ECK1732, b1734, JW1723, celF, ydjD[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
39.12 minutes |
MG1655: 1816524..1815172 |
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NC_012967: 1794413..1795765 |
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NC_012759: 1707231..1708583 |
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|
W3110 |
|
W3110: 1820214..1818862 |
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DH10B: 1907095..1905743 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
1815175 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔchbF (Keio:JW1723) |
deletion |
deletion |
|||||
|
celF::Tn5KAN-2 (FB20441) |
Insertion at nt 1164 in Minus orientation |
contains pKD46 | |||||
|
ΔchbF733::kan |
| ||||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1723 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGCCAGAAATTAAAAGTCGT Primer 2:CCATGTGCTTTTTTAAGCTCTGC | |
|
zdi-925::Tn10 |
Linked marker |
est. P1 cotransduction: 20% [7] | |
|
Linked marker |
est. P1 cotransduction: 53% [7] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Thompson, J et al. (1999) Cellobiose-6-phosphate hydrolase (CelF) of Escherichia coli: characterization and assignment to the unusual family 4 of glycosylhydrolases. J. Bacteriol. 181 7339-45 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).