thyA:Gene: Difference between revisions
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|{{Sub}}[[#Sequence Features|Sequence Features]] | |{{Sub}}[[#Sequence Features|Sequence Features]] | ||
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]] | |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]] | ||
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]] | |||
|{{Sub}}[[#Genetic Resources |Genetic Resources]] | |{{Sub}}[[#Genetic Resources |Genetic Resources]] | ||
|{{Sub}}[[#Accessions in Other Databases |Accessions]] | |{{Sub}}[[#Accessions in Other Databases |Accessions]] | ||
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===Notes=== | ===Notes=== | ||
==Genetic Interactions== | |||
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===Notes=== | |||
==Genetic Resources== | ==Genetic Resources== | ||
Revision as of 17:08, 24 June 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
thyA |
|---|---|
| Mnemonic |
Thymine |
| Synonyms |
ECK2823, b2827, JW2795[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
63.85 minutes |
MG1655: 2963177..2962383 |
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NC_012967: 2859775..2858981 |
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NC_012759: 2849531..2850325 |
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W3110 |
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W3110: 2963811..2963017 |
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DH10B: 3057047..3056253 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
2962383 |
Edman degradation |
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| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔthyA (Keio:JW2795) |
deletion |
deletion |
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thyA751 |
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thyA25 |
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thyA715 |
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thyA36 |
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thyA6 |
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thyA47 |
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thyA52 |
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thyA12 |
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thyA704 |
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thyA3 |
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thyA81 |
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thyA82 |
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thyA56 |
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thyA117 |
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thyA61 |
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thyA144 |
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thyA54 |
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thyA42 |
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thyA748::Tn10 |
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thyA147 |
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thyA148 |
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thyA45 |
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thyA702 |
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thyA55 |
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thyA43 |
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thyA11 |
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thyA24 |
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thyA305 |
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thyA14 |
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thyA33 |
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thyA114(Stable)::Mu |
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thyA20 |
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thyA707 |
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thyA111 |
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thyA16 |
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thyA15 |
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thyA705 |
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thyA48 |
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thyA714 |
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thyA95 |
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thyA44 |
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thyA710 |
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thyA0 |
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thyA299 |
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thyA59 |
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thyA746 |
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ΔthyA752 |
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thyA719 |
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thyA755 |
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thyA756 |
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ΔthyA57 |
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thyA758 |
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thyA38 |
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thyA26 |
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thyA41 |
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thyA23 |
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thyA325 |
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thyA46 |
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thyA2 |
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thyA18 |
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thyA34 |
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thyA10 |
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thyA39 |
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thyA29 |
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thyA27 |
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thyA53 |
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thyA28 |
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thyA30 |
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thyA31 |
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thyA49 |
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thyA709 |
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thyA17 |
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thyA51 |
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thyA321 |
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thyA58 |
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thyA50 |
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thyA40 |
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thyA333 |
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thyA9999(ts)::Mud(Ap,lac) |
temperature sensitive |
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thyA149 |
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thyA101 |
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thyA9 |
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thyA326 |
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thyA753 |
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thyA281 |
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thyA294 |
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thyA119 |
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thyA760 |
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thyA749 |
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thyA750 |
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| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW2795 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAAACAGTATTTAGAACTGAT Primer 2:CCGATAGCCACCGGCGCTTTAAT | |
|
Linked marker |
est. P1 cotransduction: 67% [6] | ||
|
Linked marker |
est. P1 cotransduction: % [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Belfort, M et al. (1983) Primary structure of the Escherichia coli thyA gene and its thymidylate synthase product. Proc. Natl. Acad. Sci. U.S.A. 80 4914-8 PubMed
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).