accC:Gene: Difference between revisions
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Coding Start (SO:0000323) | |||
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[[MG1655]] | |||
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3403939 | |||
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Edman degradation | |||
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PMID:1370469<br />PMID:1682920<br />PMID:9298646<br /> | |||
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Revision as of 19:19, 11 May 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
accC |
|---|---|
| Mnemonic |
Acetyl-CoA carboxylase |
| Synonyms |
ECK3243, b3256, JW3224[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_012759: 3291087..3292436 |
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|
MG1655 |
73.37 minutes |
MG1655: 3403939..3405288 |
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NC_012967: 3333808..3335157 |
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|
W3110 |
|
W3110: 3405772..3407121 |
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DH10B: 3501684..3503033 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
3403939 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
accCE23R |
E23R |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accCF363A |
F363A |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accCR366E |
R366E |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
|
accCR19E |
R19E |
Loss of homodimerization. No effect on ATP binding |
seeded from UniProt:P24182 | ||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3224 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCTGGATAAAATTGTTATTGC Primer 2:CCTTTTTCCTGAAGACCGAGTTT | |
|
Linked marker |
est. P1 cotransduction: 18% [7] | ||
|
Linked marker |
est. P1 cotransduction: 69% [7] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Li, SJ & Cronan, JE Jr (1992) The gene encoding the biotin carboxylase subunit of Escherichia coli acetyl-CoA carboxylase. J. Biol. Chem. 267 855-63 PubMed
- ↑ Kondo, H et al. (1991) Acetyl-CoA carboxylase from Escherichia coli: gene organization and nucleotide sequence of the biotin carboxylase subunit. Proc. Natl. Acad. Sci. U.S.A. 88 9730-3 PubMed
- ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).