yajQ:Gene: Difference between revisions

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!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


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Revision as of 23:38, 10 May 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yajQ

Mnemonic

Systematic nomenclature

Synonyms

ECK0420, b0426, JW5058[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.57 minutes 

MG1655: 443907..444398
gbrowse_img.php?coord=443907..444398&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 413105..413596
gbrowse_img.php?coord=413105..413596&genome=REL606&name=NC_012967&trackset=0&width=300&.png

BW2952

NC_012759: 346666..347157
gbrowse_img.php?coord=346666..347157&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

W3110

 

W3110: 443907..444398
gbrowse_img.php?coord=443907..444398&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 383238..383729
gbrowse_img.php?coord=383238..383729&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyajQ (Keio:JW5058)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC8295[3]

ΔyajQ737::kan

PMID:16738554[2]

CGSC:99639


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5058

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCCCATCTTTCGATATTGTCTC

Primer 2:CCATCGCGGAAGTTTTTGAACTG

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[3]

est. P1 cotransduction: 65% [5]

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[3]

est. P1 cotransduction: 58% [5]
Synonyms:zba-3054::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6240

EchoBASE (EcoliWiki Page)

EchoBASE:EB3379

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0426

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0537

EcoGene (EcoliWiki Page)

EcoGene:EG13613

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YAJQ

ASAP (EcoliWikiPage)

ASAP:ABE-0001478


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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