rpsL:Gene: Difference between revisions

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Fixing REL gene coord display.
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!align=left |Standard name
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''rpsL''  
''rpsL''  
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK3329, b3342, JW3304, asuB, strA''<ref name='LIB:Riley_2006'/>
''ECK3329, b3342, JW3304, asuB, strA''<ref name='LIB:Riley_2006'/>
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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NC_012967: 3402083..3402457<br />{{GBrowseFigureByCoord|3402083|3402457|REL606|NC_012967}}
NC_012967: 3402457..3402083<br />{{GBrowseFigureByCoord|3402083|3402457|REL606|NC_012967}}
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{{GBrowseLink|REL606|NC_012967|3402083|3402457|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|3402083|3402457|GBrowse (REL606)}}
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!|Feature type!!Location!!Description
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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!|Name!!URL!!Comments
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Revision as of 20:48, 21 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rpsL

Mnemonic
Synonyms

ECK3329, b3342, JW3304, asuB, strA[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

74.84 minutes 

MG1655: 3472574..3472200
gbrowse_img.php?coord=3472200..3472574&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3402457..3402083
gbrowse_img.php?coord=3402083..3402457&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 4165864..4166238
gbrowse_img.php?coord=4165864..4166238&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

Strain DH10B

K43R

Nonsynonomous mutation

PMID:18245285[2]

ASAP

This is a SNP in E. coli K-12 Strain DH10B

rpsL136(strR)

streptomycin resistant

CGSC:4522

rpsL31(strR)

streptomycin resistant

CGSC:4510

rpsL8

CGSC:4650

rpsL118(strR)

streptomycin resistant

CGSC:4748

rpsL200(strR)

streptomycin resistant

CGSC:4764

rpsL104

CGSC:4888

rpsL109(strR)

streptomycin resistant

CGSC:4933

rpsL151(strR)

streptomycin resistant

CGSC:5028

rpsL195(strR)

streptomycin resistant

CGSC:5051

rpsL134(strR)

streptomycin resistant

CGSC:5092

rpsL175(strR)

streptomycin resistant

CGSC:5097

rpsL153(strR)

streptomycin resistant

CGSC:5174

rpsL67(strR)

streptomycin resistant

CGSC:5230

rpsL135(strR)

streptomycin resistant

CGSC:5280

rpsL125(strR)

streptomycin resistant

CGSC:5300

rpsL155(strR)

streptomycin resistant

CGSC:5385

rpsL150(strR)

streptomycin resistant

CGSC:5414

rpsL100(strR)

streptomycin resistant

CGSC:5475

rpsL181(strR)

streptomycin resistant

CGSC:5536

rpsL178(strR)

streptomycin resistant

CGSC:5550

rpsL172(strR)

streptomycin resistant

CGSC:5578

rpsL173(strR)

streptomycin resistant

CGSC:5587

rpsL223(strR)

streptomycin resistant

CGSC:5720

rpsL129(strR)

streptomycin resistant

CGSC:5773

rpsL99(strR)

streptomycin resistant

CGSC:5785

rpsL14

CGSC:5791

rpsL700(strR)

streptomycin resistant

CGSC:5803

rpsL97(strR)

streptomycin resistant

CGSC:5834

rpsL78(strR)

streptomycin resistant

CGSC:5940

rpsL39(StrD)

streptomycin dependent

CGSC:5991

rpsL101(strR)

streptomycin resistant

CGSC:6009

rpsL45(strR)

streptomycin resistant

CGSC:6053

rpsL265(strR)

streptomycin resistant

CGSC:6113

rpsL704(strR)

streptomycin resistant

CGSC:6176

rpsL186(strR)

streptomycin resistant

CGSC:6191

rpsL17

CGSC:6221

rpsL198(strR)

streptomycin resistant

CGSC:6284

rpsL197(strR)

streptomycin resistant

CGSC:6295

rpsL179(strR)

streptomycin resistant

CGSC:6334

rpsL117(strR)

streptomycin resistant

CGSC:6364

rpsL126(strR)

streptomycin resistant

CGSC:6369

rpsL25(strR)

streptomycin resistant

CGSC:6532

rpsL196(strR)

streptomycin resistant

CGSC:6542

rpsL213(strR)

streptomycin resistant

CGSC:6638

rpsL212(strR)

streptomycin resistant

PMID:1089639[3] PMID:1094452[4]

CGSC:6642

rpsL124(strR)

streptomycin resistant

CGSC:6646

rpsL214(strR)

streptomycin resistant

CGSC:6650

rpsL228(strR)

streptomycin resistant

CGSC:6694

rpsL231(strR)

streptomycin resistant

CGSC:6741

rpsL999(strR)

streptomycin resistant

CGSC:6885

rpsL254(strR)

streptomycin resistant

CGSC:6967

rpsL255

CGSC:7010

rpsL261(strR)

streptomycin resistant

CGSC:7047

rpsL35(strR)

streptomycin resistant

CGSC:7214

rpsL146(strR)

streptomycin resistant

CGSC:7262

rpsL110(strR)

streptomycin resistant

CGSC:7303

rpsL145(strR)

streptomycin resistant

CGSC:7333

rpsL257(strR)

streptomycin resistant

CGSC:7347

rpsL284(strR)

streptomycin resistant

CGSC:7560

rpsL283(strR)

streptomycin resistant

CGSC:7566

rpsL180(strR)

streptomycin resistant

CGSC:7620

rpsL182(strR)

streptomycin resistant

CGSC:7730

rpsL204(strR)

streptomycin resistant

CGSC:7734

[rpsL203](strR)

streptomycin resistant

CGSC:7741

rpsL160(strR)

streptomycin resistant

CGSC:7844

rpsL140(strR)

streptomycin resistant

CGSC:7859

rpsL149(strR)

streptomycin resistant

CGSC:7933

rpsL157(strR)

streptomycin resistant

CGSC:8004

rpsL115(strR)

streptomycin resistant

CGSC:8089

rpsL20(strR)

streptomycin resistant

CGSC:8208

rpsL62(strR)

streptomycin resistant

CGSC:8248

rpsL201(strR)

streptomycin resistant

CGSC:8302

rpsL192(strR)

streptomycin resistant

CGSC:8303

rpsL190(strR)

streptomycin resistant

CGSC:8304

rpsL194(strR)

streptomycin resistant

CGSC:8305

rpsL193(strR)

streptomycin resistant

CGSC:8306

rpsL56(strR)

streptomycin resistant

CGSC:8334

rpsL171(strR)

streptomycin resistant

CGSC:8424

rpsL230(strR)

streptomycin resistant

CGSC:8538

rpsL273(strR)

streptomycin resistant

CGSC:8781

rpsL132(strR)

streptomycin resistant

CGSC:8811

rpsL174(strR)

streptomycin resistant

CGSC:8902

rpsL159(strR)

streptomycin resistant

CGSC:9102

rpsL27(strR)

streptomycin resistant

CGSC:9123

rpsL138(strR)

streptomycin resistant

CGSC:9352

rpsL69(strR)

streptomycin resistant

CGSC:9428

rpsL71(strR)

streptomycin resistant

CGSC:9433

rpsL24(strR)

streptomycin resistant

CGSC:9606

rpsL281(strR)

streptomycin resistant

CGSC:9729

rpsL263(strR)

streptomycin resistant

CGSC:9830

rpsL185(strR)

streptomycin resistant

CGSC:9848

rpsL260(strR)

streptomycin resistant

CGSC:9860

rpsL154(strR)

streptomycin resistant

CGSC:9873

rpsL120(strR)

streptomycin resistant

CGSC:10167

rpsL264(strR)

streptomycin resistant

CGSC:10251

rpsL268(strR)

streptomycin resistant

CGSC:10815

rpsL127(strR)

streptomycin resistant

CGSC:11128

rpsL16(strR)

streptomycin resistant

CGSC:11152

rpsL712(strR)

streptomycin resistant

CGSC:11323

rpsL60(strR)

streptomycin resistant

CGSC:11361

rpsL106(strR)

streptomycin resistant

CGSC:11512

rpsL123(strR)

streptomycin resistant

CGSC:11573

rpsL144(strR)

streptomycin resistant

CGSC:11592

rpsL183(strR)

streptomycin resistant

CGSC:11845

rpsL133(strR)

streptomycin resistant

CGSC:11867

rpsL229(strR)

streptomycin resistant

CGSC:11911

rpsL227(strR)

streptomycin resistant

CGSC:12062

rpsL218(strR)

streptomycin resistant

CGSC:12069

rpsL217(strR)

streptomycin resistant

CGSC:12072

rpsL253(strR)

streptomycin resistant

CGSC:12147

rpsL272(strR)

streptomycin resistant

CGSC:12213

rpsL275(strR)

streptomycin resistant

CGSC:12892

rpsL252(strR)

streptomycin resistant

CGSC:13113

rpsL18(strR)

streptomycin resistant

CGSC:13175

rpsL38(strR)

streptomycin resistant

CGSC:13182

rpsL23(strR)

streptomycin resistant

CGSC:13214

rpsL112(strR)

streptomycin resistant

CGSC:13220

rpsL40

CGSC:13289

rpsL30(strR)

streptomycin resistant

CGSC:13291

rpsL33(strR)

streptomycin resistant

CGSC:13780

rpsL114(strR)

streptomycin resistant

CGSC:13834

rpsL12(strR)

streptomycin resistant

CGSC:14003

rpsL143(strR)

streptomycin resistant

CGSC:14036

rpsL102(strR)

streptomycin resistant

CGSC:14114

rpsL119(strR)

streptomycin resistant

CGSC:14128

rpsL137(strR)

streptomycin resistant

CGSC:14243

rpsL139(strR)

streptomycin resistant

CGSC:14252

rpsL256(strR)

streptomycin resistant

CGSC:14300

rpsL184(strR)

streptomycin resistant

CGSC:14417

rpsL176(strR)

streptomycin resistant

CGSC:14482

rpsL199(strR)

streptomycin resistant

CGSC:14508

rpsL262(strR)

streptomycin resistant

CGSC:15829

rpsL58(strR)

streptomycin resistant

CGSC:16044

rpsL90(strR)

streptomycin resistant

CGSC:16625

rpsL219(strR)

streptomycin resistant

CGSC:16722

rpsL61(strR)

streptomycin resistant

CGSC:16762

rpsL91(strR)

streptomycin resistant

CGSC:16771

rpsL93(strR)

streptomycin resistant

CGSC:16844

rpsL94(strR)

streptomycin resistant

CGSC:16848

rpsL95(strR)

streptomycin resistant

CGSC:16853

rpsL128(strR)

streptomycin resistant

CGSC:16891

rpsL215(strR)

streptomycin resistant

CGSC:17217

rpsL221(strR)

streptomycin resistant

CGSC:17223

rpsL222(strR)

streptomycin resistant

CGSC:17225

rpsL224(strR)

streptomycin resistant

CGSC:17227

rpsL226(strR)

streptomycin resistant

CGSC:17229

rpsL290(strR)

streptomycin resistant

CGSC:19344

rpsL267(strR)

streptomycin resistant

CGSC:27040

rpsL321

CGSC:66484

rpsL286

CGSC:81241

rpsL9

CGSC:85704


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3304

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCGCAACAGTTAACCAGCTGGT

Primer 2:CCAGCCTTAGGACGCTTCACGCC

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[6]

est. P1 cotransduction: 15% [7]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[6]

est. P1 cotransduction: 30% [7]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10911

EchoBASE (EcoliWiki Page)

EchoBASE:EB0904

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3342

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4116

EcoGene (EcoliWiki Page)

EcoGene:EG10911

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:RPSL

CGSC (EcoliWiki Page)

CGSC:220

ASAP (EcoliWikiPage)

ASAP:ABE-0010919


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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
  3. ↑ Chakrabarti, S & Gorini, L (1975) Growth of bacteriophages MS2 and T7 on streptomycin-resistant mutants of Escherichia coli. J. Bacteriol. 121 670-4 PubMed
  4. ↑ Chakrabarti, SL & Gorini, L (1975) A link between streptomycin and rifampicin mutation. Proc. Natl. Acad. Sci. U.S.A. 72 2084-7 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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