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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="Y46a9d09464006" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''znuA''  
''znuA''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Zn uptake
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK1858, b1857, JW5831, yebL, yzzP''<ref name='LIB:Riley_2006'/>
''ECK1858, b1857, JW5831, yebL, yzzP''<ref name='LIB:Riley_2006'/>, yzzP''


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*  
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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46a9d094dfa70"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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41.81 minutes, 41.81 minutes&nbsp;
41.81 minutes, 41.81 minutes&nbsp;
|
|
MG1655: 1940607..1939675<br />{{GBrowseFigureByCoord|1938675|1941607|ecoli|MG1655}}
MG1655: 1940607..1939675<br /><gbrowseImage>
name=NC_000913:1939675..1940607
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7017 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7017 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|1938675|1941607|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|1938675|1941607|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|1939675|1940607|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|1939675|1940607|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7017 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G7017 EcoCyc Sequence Dump]  
|-
|
[[REL606]]
|
|
NC_012967: 1921159..1920227<br /><gbrowseImage>
name=NC_012967:1920227..1921159
source=REL606
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|REL606|NC_012967|1920227|1921159|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1920227|1921159|FASTA Dump}}
|-
|
[[BW2952]]
|
|
NC_012759: 1831734..1832666<br /><gbrowseImage>
name=NC_012759:1831734..1832666
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|1831734|1832666|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1831734|1832666|FASTA Dump}}
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&nbsp;
&nbsp;
|
|
W3110: 1944297..1943365<br />{{GBrowseFigureByCoord|1942365|1945297|ecoli_W3110|W3110}}
W3110: 1944297..1943365<br /><gbrowseImage>
name=NC_007779:1943365..1944297
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|1942365|1945297|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|1942365|1945297|GBrowse(W3110)}}  
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|1943365|1944297|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|1943365|1944297|FASTA Dump}}  
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|
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DH10B: 2031178..2030246<br />{{GBrowseFigureByCoord|2028382|2033042|ecoli_DH10B|DH10B}}
DH10B: 2031178..2030246<br /><gbrowseImage>
name=NC_010473:2030246..2031178
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|2028382|2033042|GBrowse(DH10B)}}
{{GBrowseLink|DH10B|NC_010473|2028382|2033042|GBrowse(DH10B)}}
|
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{{GBrowseFastaLink|ecoli_DH10B|NC_010473|2028382|2033042|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|2028382|2033042|FASTA Dump}}  


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|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
1939678
|
Edman degradation
|
PMID:9298646<br />PMID:9600841<br />PMID:9740056<br />
|


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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
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|- {{table_heading_style}}
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
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===Notes===


==Genetic Resources==
==Genetic Resources==
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est. P1 cotransduction: 9% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 9% <ref name='LIB:Nichols_linked_Tn'/>  


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|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
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|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7017 EcoCyc:G7017]
EcoCyc:G7017
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2543 EchoBASE:EB2543]
EcoGene:EG12678
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b1857 EcoliGenExpDB:b1857]
RegulonDB:ECK120003604
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C2271 ECOL199310CYC:C2271]
[http://www.ncbi.nlm.nih.gov/gene?term=946375 GeneID:946375]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG12678 EcoGene:EG12678]
EchoBASE:EB2543
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
|
|
[http://BioCyc.org/ECOO157/new-image?object=YEBL ECOO157CYC:YEBL]
ASAP:ABE-0006191
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-  
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006191&formSubmitReturn=1 ASAP:ABE-0006191]
|


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[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:znu genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:znu genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:39, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

znuA

Mnemonic

Zn uptake

Synonyms

ECK1858, b1857, JW5831, yebL, yzzP[1], yzzP

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

41.81 minutes, 41.81 minutes 

MG1655: 1940607..1939675
<gbrowseImage> name=NC_000913:1939675..1940607 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1921159..1920227
<gbrowseImage> name=NC_012967:1920227..1921159 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1831734..1832666
<gbrowseImage> name=NC_012759:1831734..1832666 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1944297..1943365
<gbrowseImage> name=NC_007779:1943365..1944297 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2031178..2030246
<gbrowseImage> name=NC_010473:2030246..2031178 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1939678

Edman degradation

PMID:9298646[2]
PMID:9600841[3]
PMID:9740056[4]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔznuA (Keio:JW5831)

deletion

deletion

PMID:16738554[5]

Shigen


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5831

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCTTACATAAAAAAACGCTTCT

Primer 2:CCATCTCCTTTCAGGCAGCTCGC

eda-51::Tn10

Linked marker

CAG18486 = CGSC7392[7]

est. P1 cotransduction: 72% [8]

uvrC279::Tn10

Linked marker

CAG12156 = CGSC7394[7]

est. P1 cotransduction: 9% [8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7017

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12678

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003604

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946375

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2543

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006191

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  3. ↑ Wilkins, MR et al. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J. Mol. Biol. 278 599-608 PubMed
  4. ↑ Tonella, L et al. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19 1960-71 PubMed
  5. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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