yciM:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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*  
*  
****************************************************************************************** -->{{Gene_nomenclature_help}}
****************************************************************************************** -->{{Gene_nomenclature_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="S46a9c3b2f3291" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''yciM''  
''yciM''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Systematic nomenclature
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK1275, b1280, JW1272''<ref name='LIB:Riley_2006'/>
''ECK1275, b1280, JW1272''<ref name='LIB:Riley_2006'/>, JW1272''


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*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46a9c3b378936"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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28.85 minutes&nbsp;
28.85 minutes&nbsp;
|
|
MG1655: 1338582..1339751<br />{{GBrowseFigureByCoord|1337582|1340751|ecoli|MG1655}}
MG1655: 1338582..1339751<br /><gbrowseImage>
name=NC_000913:1338582..1339751
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12691 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12691 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|1337582|1340751|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|1337582|1340751|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|1338582|1339751|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|1338582|1339751|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12691 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG12691 EcoCyc Sequence Dump]  
|-
|
[[REL606]]
|
|
NC_012967: 1338930..1340099<br /><gbrowseImage>
name=NC_012967:1338930..1340099
source=REL606
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|REL606|NC_012967|1338930|1340099|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1338930|1340099|FASTA Dump}}
|-
|
[[BW2952]]
|
|
NC_012759: 1229431..1230600<br /><gbrowseImage>
name=NC_012759:1229431..1230600
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|1229431|1230600|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1229431|1230600|FASTA Dump}}
|-  
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&nbsp;
&nbsp;
|
|
W3110: 1342272..1343441<br />{{GBrowseFigureByCoord|1341272|1344441|ecoli_W3110|W3110}}  
W3110: 1342272..1343441<br /><gbrowseImage>
name=NC_007779:1342272..1343441
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|W3110|NC_007779|1341272|1344441|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|1342272|1343441|FASTA Dump}}  
|-
|
[[DH10B]]
|
 
|
DH10B: 1427978..1429147<br /><gbrowseImage>
name=NC_010473:1427978..1429147
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|1341272|1344441|GBrowse(W3110)}}  
{{GBrowseLink|DH10B|NC_010473|1425640|1431485|GBrowse(DH10B)}}
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|1342272|1343441|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|1425640|1431485|FASTA Dump}}  


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*  
*  
****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46a9c3b42600b"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


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*  
*  
****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9c3b4678b1"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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|
|


|[[PMID:16738554]]<ref name=PMID:16738554/>
|
PMID:16738554
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=107425 CGSC9144]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=107425 CGSC9144]<ref name='LIB:cgsc'/>  
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|DL-a-Glycerol]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Acetate]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketobutyrate]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketoglutarate]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Succinate]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Bromosuccinate]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Alanine]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Alanyl-glycine]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Asparagine]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Aspartate]]
|
PMID:16095938
|
|
|-
|
&Delta;yciM::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Serine]]
|
PMID:16095938
|
|
|
   
   
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|
|


|[[PMID:16738554]]<ref name=PMID:16738554/>
|
PMID:16738554
|
|
[[cgscmutation:104066|CGSC:104066]]
[[cgscmutation:104066|CGSC:104066]]
|
|
   
   
|-
|
yciM
|
deletion
|


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Sensitivity to
|
increases sensitivity to bicyclomycin
|
PMID:21357484
|
 
|
fig 2
 
|- class="tableEdit_footer"
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.13127.G4e04c7558e29a-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G4e04c7558e29a"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.13127.G4e04c7558e29a&page=13127&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.13127.G4e04c7558e29a--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a9c3b514e8b"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|[[PMID:16769691]]<ref name=PMID:16769691/>
|
PMID:16769691


Status:Clone OK
Status:Clone OK
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Primer 2:CCaAGGCCATCAAGACCGCGAAT  
Primer 2:CCaAGGCCATCAAGACCGCGAAT  
|-
|
[[:Category:Kohara_Phage:18B6|18B6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=255 Genobase]
|
PMID:3038334
|-  
|-  
|
|
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CAG18455 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39837 CGSC7371]<ref name='LIB:cgsc'/>
CAG18455 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39837 CGSC7371]<ref name='LIB:cgsc'/>
|
|
est. P1 cotransduction: 46% <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:trpB83::Tn10  
est. P1 cotransduction: 46% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:trpB83::Tn10  
|-  
|-  
|
|
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CAG12028 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39843 CGSC7373]<ref name='LIB:cgsc'/>
CAG12028 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39843 CGSC7373]<ref name='LIB:cgsc'/>
|
|
est. P1 cotransduction: 31% <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:zci-233::Tn10  
est. P1 cotransduction: 31% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zci-233::Tn10  


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a9c3b5a1907"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12691 EcoCyc:EG12691]
EcoCyc:EG12691
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2554 EchoBASE:EB2554]
EcoGene:EG12691
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b1280 EcoliGenExpDB:b1280]
RegulonDB:ECK120002356
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C1749 ECOL199310CYC:C1749]
[http://www.ncbi.nlm.nih.gov/gene?term=944858 GeneID:944858]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG12691 EcoGene:EG12691]
EchoBASE:EB2554
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
|
|
[http://BioCyc.org/ECOO157/new-image?object=YCIM ECOO157CYC:YCIM]
ASAP:ABE-0004300
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-  
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0004300&formSubmitReturn=1 ASAP:ABE-0004300]
|


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!|Name!!URL!!Comments
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==References==
==References==
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===Categories===
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:MG1655]]
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[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yci genes]]
[[Category:yci genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:30, 19 September 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yciM

Mnemonic

Systematic nomenclature

Synonyms

ECK1275, b1280, JW1272[1], JW1272

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

28.85 minutes 

MG1655: 1338582..1339751
<gbrowseImage> name=NC_000913:1338582..1339751 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1338930..1340099
<gbrowseImage> name=NC_012967:1338930..1340099 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1229431..1230600
<gbrowseImage> name=NC_012759:1229431..1230600 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1342272..1343441
<gbrowseImage> name=NC_007779:1342272..1343441 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1427978..1429147
<gbrowseImage> name=NC_010473:1427978..1429147 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyciM (Keio:JW1272)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC9144[3]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire DL-a-Glycerol

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938[4]

ΔyciM::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938[4]

ΔyciM788::kan

PMID:16738554[2]

CGSC:104066

yciM

deletion

Sensitivity to

increases sensitivity to bicyclomycin

PMID:21357484[5]

fig 2

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1272

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCCTGGAGTTGTTGTTTCTGCT

Primer 2:CCaAGGCCATCAAGACCGCGAAT

18B6

Kohara Phage

Genobase

PMID:3038334[7]

trpC83::Tn10

Linked marker

CAG18455 = CGSC7371[3]

est. P1 cotransduction: 46% [8]
Synonyms:trpB83::Tn10

zcj-233::Tn10

Linked marker

CAG12028 = CGSC7373[3]

est. P1 cotransduction: 31% [8]
Synonyms:zci-233::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12691

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12691

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002356

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944858

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2554

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004300

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  5. ↑ Tran, L et al. (2011) Single-gene deletion mutants of Escherichia coli with altered sensitivity to bicyclomycin, an inhibitor of transcription termination factor Rho. J. Bacteriol. 193 2229-35 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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