thyA:Gene: Difference between revisions

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<noinclude>{{TabsTop}}  
<noinclude>{{TabsTop}}  
{{Tab|Quickview|thyA}}{{Tab On|Gene|thyA}}{{Tab|Gene Product(s)|thyA}}{{Tab|Expression|thyA}}{{Tab|Evolution|thyA}}{{Tab|On One Page|thyA}}{{TabsBottom}}
{{Tab|Quickview|thyA}}{{Tab On|Gene|thyA}}{{Tab|Gene Product(s)|thyA}}{{Tab|Expression|thyA}}{{Tab|Evolution|thyA}}{{Tab|On One Page|thyA}}{{TabsBottom}}
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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
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{|  id="P46a9e7393228c"  class=" tableEdit Gene_nomenclature_table" 
 
|-
|-
!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
|
||
''thyA''  
''thyA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Thymine
|-
|-
!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Synonyms
|
||
''ECK2823, b2827, JW2795''<ref name='LIB:Riley_2006'/>, JW2795''


|-
|- class="tableEdit_footer"
!{{table_heading_style}} |Synonyms
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16221.P46a9e7393228c&page=16221&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> ||
|
''ECK2823, b2827, JW2795''<ref name='LIB:Riley_2006'/>
|-
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<!--Nomenclature_notes--></protect>
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===Notes===
===Notes===
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==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>
<protect>
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{|class = 'sortable' {{Prettytable}} id='21454'
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46a9e739b11cc"  class=" tableEdit Gene_location_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|-  
|
|
MG1655
MG1655
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63.85 minutes&nbsp;
63.85 minutes&nbsp;
|
|
MG1655: 2963177..2962383<br />{{GBrowseFigureByCoord|2961383|2964177|ecoli|MG1655}}
MG1655: 2963177..2962383<br /><gbrowseImage>
name=NC_000913:2962383..2963177
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11002 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11002 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:2961383..2964177 GBrowse(MG1655)]
{{GBrowseLink|MG1655|NC_000913|2961383|2964177|GBrowse(MG1655)}}
   
   
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:2962383..2963177&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|MG1655|NC_000913|2962383|2963177|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11002 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG11002 EcoCyc Sequence Dump]  
|-
|-
|
[[REL606]]
|
 
|
NC_012967: 2859775..2858981<br /><gbrowseImage>
name=NC_012967:2858981..2859775
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|REL606|NC_012967|2858981|2859775|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2858981|2859775|FASTA Dump}}
|-
|
[[BW2952]]
|
 
|
NC_012759: 2849531..2850325<br /><gbrowseImage>
name=NC_012759:2849531..2850325
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|BW2952|NC_012759|2849531|2850325|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2849531|2850325|FASTA Dump}}
|-  
|
|
W3110
W3110
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&nbsp;
&nbsp;
|
|
W3110: 2963811..2963017<br />{{GBrowseFigureByCoord|2962017|2964811|ecoli_W3110|W3110}}  
W3110: 2963811..2963017<br /><gbrowseImage>
name=NC_007779:2963017..2963811
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|W3110|NC_007779|2962017|2964811|GBrowse(W3110)}}  
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:2962017..2964811 GBrowse(W3110)]
{{GBrowseFastaLink|W3110|NC_007779|2963017|2963811|FASTA Dump}}
|-  
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:2963017..2963811&plugin_action=Go FASTA Dump]
[[DH10B]]
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DH10B: 3057047..3056253<br /><gbrowseImage>
name=NC_010473:3056253..3057047
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|DH10B|NC_010473|3054665|3058635|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3054665|3058635|FASTA Dump}}
 
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===Notes===
===Notes===
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==Sequence Features==
==Sequence Features==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46a9e73a6d387"  class=" tableEdit Gene_sequence_features_table" 
|- {{table_heading_style}}
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-class='sortbottom'
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Coding Start (SO:0000323)
|
[[MG1655]]
|
2962383
|
Edman degradation
|
PMID:6308660<br />
|
 
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====Notes====
====Notes====
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==Alleles and Phenotypes==
==Alleles and Phenotypes==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9e73ab4982"  class=" tableEdit Gene_allele_table dataTable" 
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..N469fadf59b99e&page=&pagename={{FULLPAGENAMEE}} edit table] || || || || || ||
|
''thyA(del)'' (Keio:JW2795)
|
deletion
|
deletion
|
 
|
 
|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|
|-
|
''thyA751''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:4790|CGSC:4790]]
|
|-
|
''thyA25''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:4870|CGSC:4870]]
|
|-
|
''thyA715''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:5108|CGSC:5108]]
|
|-
|
''thyA36''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:5214|CGSC:5214]]
|
|-
|
''thyA6''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:5229|CGSC:5229]]
|
|-
|
''thyA47''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:5247|CGSC:5247]]
|
|-
|
''thyA52''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:5930|CGSC:5930]]
|
|-
|
''thyA12''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6324|CGSC:6324]]
|
|-
|
''thyA704''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6454|CGSC:6454]]
|
|-
|
''thyA3''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6456|CGSC:6456]]
|
|-
|
''thyA81''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6550|CGSC:6550]]
|
|-
|
''thyA82''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6553|CGSC:6553]]
|
|-
|
''thyA56''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6624|CGSC:6624]]
|
|-
|
''thyA117''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6693|CGSC:6693]]
|
|-
|
''thyA61''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6774|CGSC:6774]]
|
|-
|
''thyA144''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6965|CGSC:6965]]
|
|-
|
''thyA54''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6984|CGSC:6984]]
|
|-
|
''thyA42''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:7046|CGSC:7046]]
|
|-
|
''thyA748::Tn10''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:7146|CGSC:7146]]
|
|-
|
''thyA147''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:7435|CGSC:7435]]
|
|-
|
''thyA148''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:7441|CGSC:7441]]
|
|-
|
''thyA45''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:7744|CGSC:7744]]
|
|-
|
''thyA702''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:7782|CGSC:7782]]
|
|-
|
''thyA55''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8013|CGSC:8013]]
|
|-
|
''thyA43''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8047|CGSC:8047]]
|
|-
|
''thyA11''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8289|CGSC:8289]]
|
|-
|
''thyA24''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8317|CGSC:8317]]
|
|-
|
''thyA305''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8415|CGSC:8415]]
|
|-
|
''thyA14''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8453|CGSC:8453]]
|
|-
|
''thyA33''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8524|CGSC:8524]]
|
|-
|
''thyA114''(Stable)''::Mu''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8530|CGSC:8530]]
|
|-
|
''thyA20''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8680|CGSC:8680]]
|
|-
|
''thyA707''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8791|CGSC:8791]]
|
|-
|
''thyA111''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:8970|CGSC:8970]]
|
|-
|
''thyA16''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9232|CGSC:9232]]
|
|-
|
''thyA15''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9246|CGSC:9246]]
|
|-
|
''thyA705''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9518|CGSC:9518]]
|
|-
|
''thyA48''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9636|CGSC:9636]]
|
|-
|
''thyA714''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9655|CGSC:9655]]
|
|-
|
''thyA95''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9679|CGSC:9679]]
|
|-
|
''thyA44''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9739|CGSC:9739]]
|
|-
|
''thyA710''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9829|CGSC:9829]]
|
|-
|
''thyA0''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:9977|CGSC:9977]]
|
|-
|
''thyA299''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10047|CGSC:10047]]
|
|-
|
''thyA59''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10129|CGSC:10129]]
|
|-
|
''thyA746''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10313|CGSC:10313]]
|
|-
|
''thyA752(del)''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10675|CGSC:10675]]
|
|-
|
''thyA719''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10685|CGSC:10685]]
|
|-
|
''thyA755''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10854|CGSC:10854]]
|
|-
|
''thyA756''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10867|CGSC:10867]]
|
|-
|
''thyA57(del)''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10899|CGSC:10899]]
|
|-
|
''thyA758''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:10937|CGSC:10937]]
|
|-
|
''thyA38''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:11040|CGSC:11040]]
|
|-
|
''thyA26''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:11309|CGSC:11309]]
|
|-
|
''thyA41''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:11313|CGSC:11313]]
|
|-
|
''thyA23''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:11395|CGSC:11395]]
|
|-
|
''thyA325''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:11630|CGSC:11630]]
|
|-
|
''thyA46''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:11771|CGSC:11771]]
|
|-
|
''thyA2''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:13565|CGSC:13565]]
|
|-
|
''thyA18''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:13591|CGSC:13591]]
|
|-
|
''thyA34''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:13776|CGSC:13776]]
|
|-
|
''thyA10''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:13932|CGSC:13932]]
|
|-
|
''thyA39''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:13966|CGSC:13966]]
|
|-
|
''thyA29''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14002|CGSC:14002]]
|
|-
|
''thyA27''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14007|CGSC:14007]]
|
|-
|
''thyA53''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14054|CGSC:14054]]
|
|-
|
''thyA28''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14170|CGSC:14170]]
|
|-
|
''thyA30''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14178|CGSC:14178]]
|
|-
|
''thyA31''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14184|CGSC:14184]]
|
|-
|
''thyA49''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14623|CGSC:14623]]
|
|-
|
''thyA709''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:14678|CGSC:14678]]
|
|-
|
''thyA17''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:16221|CGSC:16221]]
|
|-
|
''thyA51''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:16360|CGSC:16360]]
|
|-
|
''thyA321''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:16724|CGSC:16724]]
|
|-
|
''thyA58''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:16920|CGSC:16920]]
|
|-
|
''thyA50''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:16936|CGSC:16936]]
|
|-
|
''thyA40''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:17076|CGSC:17076]]
|
|-
|
''thyA333''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:19205|CGSC:19205]]
|
|-
|
''thyA9999''(ts)''::Mud(Ap,lac)''
|
 
|
 
|
 
|
temperature sensitive
|
 
|
[[cgscmutation:19260|CGSC:19260]]
|
|-
|
''thyA149''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:19317|CGSC:19317]]
|
|-
|
''thyA101''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:19651|CGSC:19651]]
|
|-
|
''thyA9''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:23655|CGSC:23655]]
|
|-
|
''thyA326''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:27048|CGSC:27048]]
|
|-
|
''thyA753''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:29474|CGSC:29474]]
|
|-
|
''thyA281''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:66486|CGSC:66486]]
|
|-
|
''thyA294''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:72642|CGSC:72642]]
|
|-
|
''thyA119''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:74742|CGSC:74742]]
|
|-
|
''thyA760''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:79050|CGSC:79050]]
|
|-
|
''thyA749''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:80478|CGSC:80478]]
|
|-
|
''thyA750''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:80480|CGSC:80480]]
|
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16221.L46a9e73ab4982&page=16221&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> || || || || || || ||
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{{Gene_alleles_help}}
 
<protect><!--Alleles_notes--></protect>
<protect><!--Alleles_notes--></protect>
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.16221.T4e04c4a8f3138-->
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|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
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<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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|- {{table_heading_style}}
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!Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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|
JW2795
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691
 
Status:Clone OK
 
Primer 1:GCCAAACAGTATTTAGAACTGAT
 
Primer 2:CCGATAGCCACCGGCGCTTTAAT
|-
|
[[:Category:Kohara_Phage:3G11|3G11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=460 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:5A10|5A10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=461 Genobase]
|
PMID:3038334
|-
|
[[recD:Gene|recD1901::Tn10]]
|
Linked marker
|
CAG12135 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40106 CGSC7429]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 67% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[speA:Gene|speA210::Tn10]]
|
Linked marker
|
CAG12168 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40110 CGSC7431]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zgd-210::Tn10, zgf-210::Tn10
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16221.S46a9e73b710e1&page=16221&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table]</span> || || ||
|}
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===Notes===
===Notes===
Line 126: Line 1,864:


==Accessions in Other Databases==
==Accessions in Other Databases==
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|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11002 EcoCyc:EG11002] 
EcoCyc:EG11002
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0995 EchoBASE:EB0995] 
EcoGene:EG11002
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2827 EcoliGenExpDB:b2827] 
RegulonDB:ECK120000991
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C3422 ECOL199310CYC:C3422]
[http://www.ncbi.nlm.nih.gov/gene?term=949035 GeneID:949035]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG11002 EcoGene:EG11002] 
EchoBASE:EB0995
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
|
|
[http://BioCyc.org/ECOO157/new-image?object=THYA ECOO157CYC:THYA] 
ASAP:ABE-0009268
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-
 
|
|- class="tableEdit_footer"
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16221.U46a9e73c15556&page=16221&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/104 CGSC:104] 
|
|-class='sortbottom'
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===Notes===
===Notes===
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==Links==
==Links==
{{BacktoTop}}
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<noinclude><protect>
<noinclude><protect>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:thy genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:44, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

thyA

Mnemonic

Thymine

Synonyms

ECK2823, b2827, JW2795[1], JW2795

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

63.85 minutes 

MG1655: 2963177..2962383
<gbrowseImage> name=NC_000913:2962383..2963177 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2859775..2858981
<gbrowseImage> name=NC_012967:2858981..2859775 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2849531..2850325
<gbrowseImage> name=NC_012759:2849531..2850325 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2963811..2963017
<gbrowseImage> name=NC_007779:2963017..2963811 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3057047..3056253
<gbrowseImage> name=NC_010473:3056253..3057047 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2962383

Edman degradation

PMID:6308660[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

thyA(del) (Keio:JW2795)

deletion

deletion

PMID:16738554[3]

Shigen

thyA751

CGSC:4790

thyA25

CGSC:4870

thyA715

CGSC:5108

thyA36

CGSC:5214

thyA6

CGSC:5229

thyA47

CGSC:5247

thyA52

CGSC:5930

thyA12

CGSC:6324

thyA704

CGSC:6454

thyA3

CGSC:6456

thyA81

CGSC:6550

thyA82

CGSC:6553

thyA56

CGSC:6624

thyA117

CGSC:6693

thyA61

CGSC:6774

thyA144

CGSC:6965

thyA54

CGSC:6984

thyA42

CGSC:7046

thyA748::Tn10

CGSC:7146

thyA147

CGSC:7435

thyA148

CGSC:7441

thyA45

CGSC:7744

thyA702

CGSC:7782

thyA55

CGSC:8013

thyA43

CGSC:8047

thyA11

CGSC:8289

thyA24

CGSC:8317

thyA305

CGSC:8415

thyA14

CGSC:8453

thyA33

CGSC:8524

thyA114(Stable)::Mu

CGSC:8530

thyA20

CGSC:8680

thyA707

CGSC:8791

thyA111

CGSC:8970

thyA16

CGSC:9232

thyA15

CGSC:9246

thyA705

CGSC:9518

thyA48

CGSC:9636

thyA714

CGSC:9655

thyA95

CGSC:9679

thyA44

CGSC:9739

thyA710

CGSC:9829

thyA0

CGSC:9977

thyA299

CGSC:10047

thyA59

CGSC:10129

thyA746

CGSC:10313

thyA752(del)

CGSC:10675

thyA719

CGSC:10685

thyA755

CGSC:10854

thyA756

CGSC:10867

thyA57(del)

CGSC:10899

thyA758

CGSC:10937

thyA38

CGSC:11040

thyA26

CGSC:11309

thyA41

CGSC:11313

thyA23

CGSC:11395

thyA325

CGSC:11630

thyA46

CGSC:11771

thyA2

CGSC:13565

thyA18

CGSC:13591

thyA34

CGSC:13776

thyA10

CGSC:13932

thyA39

CGSC:13966

thyA29

CGSC:14002

thyA27

CGSC:14007

thyA53

CGSC:14054

thyA28

CGSC:14170

thyA30

CGSC:14178

thyA31

CGSC:14184

thyA49

CGSC:14623

thyA709

CGSC:14678

thyA17

CGSC:16221

thyA51

CGSC:16360

thyA321

CGSC:16724

thyA58

CGSC:16920

thyA50

CGSC:16936

thyA40

CGSC:17076

thyA333

CGSC:19205

thyA9999(ts)::Mud(Ap,lac)

temperature sensitive

CGSC:19260

thyA149

CGSC:19317

thyA101

CGSC:19651

thyA9

CGSC:23655

thyA326

CGSC:27048

thyA753

CGSC:29474

thyA281

CGSC:66486

thyA294

CGSC:72642

thyA119

CGSC:74742

thyA760

CGSC:79050

thyA749

CGSC:80478

thyA750

CGSC:80480


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2795

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCAAACAGTATTTAGAACTGAT

Primer 2:CCGATAGCCACCGGCGCTTTAAT

3G11

Kohara Phage

Genobase

PMID:3038334[5]

5A10

Kohara Phage

Genobase

PMID:3038334[5]

recD1901::Tn10

Linked marker

CAG12135 = CGSC7429[6]

est. P1 cotransduction: 67% [7]

speA210::Tn10

Linked marker

CAG12168 = CGSC7431[6]

est. P1 cotransduction: % [7]
Synonyms:zgd-210::Tn10, zgf-210::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11002

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11002

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000991

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:949035

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0995

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009268

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Belfort, M et al. (1983) Primary structure of the Escherichia coli thyA gene and its thymidylate synthase product. Proc. Natl. Acad. Sci. U.S.A. 80 4914-8 PubMed
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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