ubiF:Gene: Difference between revisions

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<noinclude>{{TabsTop}}  
<noinclude>{{TabsTop}}  
{{Tab|Quickview|ubiF}}{{Tab On|Gene|ubiF}}{{Tab|Gene Product(s)|ubiF}}{{Tab|Expression|ubiF}}{{Tab|Evolution|ubiF}}{{Tab|On One Page|ubiF}}{{TabsBottom}}
{{Tab|Quickview|ubiF}}{{Tab On|Gene|ubiF}}{{Tab|Gene Product(s)|ubiF}}{{Tab|Expression|ubiF}}{{Tab|Evolution|ubiF}}{{Tab|On One Page|ubiF}}{{TabsBottom}}
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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
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<!--
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{|  id="T46a9b60b9eadb"  class=" tableEdit Gene_nomenclature_table" 
 
|-
|-
!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
|
||
''ubiF''  
''ubiF''
|-
|-
!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
|
||
 
Ubiquinone
|-
|-
!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
|
||
''ECK0654, b0662, JW0659, yleB, G211''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK0654, b0662, JW0659, yleB, G211''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
 
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{{Gene_nomenclature_help}}
 
<!--Nomenclature_notes--></protect>
<!--Nomenclature_notes--></protect>
===Notes===
===Notes===
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==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>
<protect>
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46a9b60c22159"  class=" tableEdit Gene_location_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|-  
|
|
MG1655
MG1655
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14.96 minutes&nbsp;
14.96 minutes&nbsp;
|
|
MG1655: 694324..695499<br />{{GBrowseFigureByCoord|693324|696499|ecoli|MG1655}}
MG1655: 694324..695499<br /><gbrowseImage>
name=NC_000913:694324..695499
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6365 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6365 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:693324..696499 GBrowse(MG1655)]
{{GBrowseLink|MG1655|NC_000913|693324|696499|GBrowse(MG1655)}}
   
   
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:694324..695499&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|MG1655|NC_000913|694324|695499|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6365 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G6365 EcoCyc Sequence Dump]  
|-
|-
|
[[REL606]]
|
 
|
NC_012967: 677196..678371<br /><gbrowseImage>
name=NC_012967:677196..678371
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|REL606|NC_012967|677196|678371|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|677196|678371|FASTA Dump}}
|-
|
[[BW2952]]
|
 
|
NC_012759: 597084..598259<br /><gbrowseImage>
name=NC_012759:597084..598259
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|BW2952|NC_012759|597084|598259|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|597084|598259|FASTA Dump}}
|-  
|
|
W3110
W3110
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&nbsp;
&nbsp;
|
|
W3110: 695523..696698<br />{{GBrowseFigureByCoord|694523|697698|ecoli_W3110|W3110}}
W3110: 695523..696698<br /><gbrowseImage>
name=NC_007779:695523..696698
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:694523..697698 GBrowse(W3110)]
{{GBrowseLink|W3110|NC_007779|694523|697698|GBrowse(W3110)}}
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:695523..696698&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|W3110|NC_007779|695523|696698|FASTA Dump}}
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|
[[DH10B]]
|
 
|
DH10B: 746916..748091<br /><gbrowseImage>
name=NC_010473:746916..748091
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|DH10B|NC_010473|744566|750441|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|744566|750441|FASTA Dump}}
 
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<!--Location_notes--></protect>
<!--Location_notes--></protect>
===Notes===
===Notes===
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==Sequence Features==
==Sequence Features==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46a9b60cbedaf"  class=" tableEdit Gene_sequence_features_table" 
|- {{table_heading_style}}
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-class='sortbottom'
 
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<protect><!--Sequence_notes--></protect>
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====Notes====
====Notes====
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==Alleles and Phenotypes==
==Alleles and Phenotypes==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9b60d0a595"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-class='sortbottom'
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''ubiF(del)'' (Keio:JW0659)
|
deletion
|
deletion
|
 
|
 
|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br />[http://cgsc2.biology.yale.edu/Strain.php?ID=107031 CGSC8750]<ref name='LIB:cgsc'/>
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Fucose]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|b-Methyl-D-glucoside]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Glycerol]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|D-Galacturonate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|D-Glucuronate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Acetate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Hydroxybutyrate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketobutyrate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketoglutarate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|DL-Lactate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Succinate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Bromosuccinate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Glucuronamide]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Alanine]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Alanyl-glycine]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Asparagine]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Aspartate]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Serine]]
|
PMID:16095938
|
 
|
|-
|
''ubiF(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Uridine]]
|
PMID:16095938
|
 
|
|-
|
''ubiF411''
|
 
|
 
|
 
|
 
|
 
|
[[cgscmutation:6809|CGSC:6809]]
|
|-
|
''ubiF722(del)''::kan
|
 
|
 
|
 
|
 
|
PMID:16738554
|
[[cgscmutation:103270|CGSC:103270]]
|
 
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{{Gene_alleles_help}}
 
<protect><!--Alleles_notes--></protect>
<protect><!--Alleles_notes--></protect>
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.11885.W4e04c526760e2-->
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W4e04c526760e2"  class=" tableEdit Genetic_interaction_table dataTable" 
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!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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!Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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|
JW0659
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691
 
Status:Clone OK
 
Primer 1:GCCACAAATCAACCAACGGAAAT
 
Primer 2:CCCAACCCTAACGCATATTTCAG
|-
|
[[:Category:Kohara_Phage:16A8|16A8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=171 Genobase]
|
PMID:3038334
|-
|
[[crcA:Gene|crcA280::Tn10]]
|
Linked marker
|
CAG12077 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39388 CGSC7347]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 18% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zbe-280::Tn10
|-
|
[[asnB:Gene|asnB3057::Tn10]]
|
Linked marker
|
CAG18433 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39394 CGSC7349]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 81% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.
 
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<protect><!--Gene_resources_notes--></protect>
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===Notes===
===Notes===
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==Accessions in Other Databases==
==Accessions in Other Databases==
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!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6365 EcoCyc:G6365] 
EcoCyc:G6365
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3422 EchoBASE:EB3422] 
EcoGene:EG13658
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
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[http://chase.ou.edu/macro/searchlink.php?bnum=b0662 EcoliGenExpDB:b0662] 
RegulonDB:ECK120002972
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C0748 ECOL199310CYC:C0748]
[http://www.ncbi.nlm.nih.gov/gene?term=945261 GeneID:945261]
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Escherichia coli str. K-12 substr. MG1655
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
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[http://ecogene.org/geneinfo.php?eg_id=EG13658 EcoGene:EG13658] 
EchoBASE:EB3422
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
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[http://BioCyc.org/ECOO157/new-image?object=YLEB ECOO157CYC:YLEB] 
ASAP:ABE-0002265
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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===Notes===
===Notes===
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==Links==
==Links==
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==References==
==References==
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===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ubi genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:34, 19 September 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ubiF

Mnemonic

Ubiquinone

Synonyms

ECK0654, b0662, JW0659, yleB, G211[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

14.96 minutes 

MG1655: 694324..695499
<gbrowseImage> name=NC_000913:694324..695499 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 677196..678371
<gbrowseImage> name=NC_012967:677196..678371 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 597084..598259
<gbrowseImage> name=NC_012759:597084..598259 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 695523..696698
<gbrowseImage> name=NC_007779:695523..696698 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 746916..748091
<gbrowseImage> name=NC_010473:746916..748091 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ubiF(del) (Keio:JW0659)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC8750[4]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire L-Fucose

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire Glycerol

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire D-Glucuronate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938[5]

ubiF(del)::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938[5]

ubiF411

CGSC:6809

ubiF722(del)::kan

PMID:16738554[3]

CGSC:103270


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0659

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCACAAATCAACCAACGGAAAT

Primer 2:CCCAACCCTAACGCATATTTCAG

16A8

Kohara Phage

Genobase

PMID:3038334[7]

crcA280::Tn10

Linked marker

CAG12077 = CGSC7347[4]

est. P1 cotransduction: 18% [8]
Synonyms:zbe-280::Tn10

asnB3057::Tn10

Linked marker

CAG18433 = CGSC7349[4]

est. P1 cotransduction: 81% [8]
Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6365

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13658

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002972

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945261

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3422

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002265

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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