insB-7 2:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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*  
*  
****************************************************************************************** -->{{Gene_nomenclature_help}}
****************************************************************************************** -->{{Gene_nomenclature_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="D46a9a69c96c4d" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''insB-7_2''  
''insB-7_2''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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''insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>


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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.D46a9a69c96c4d&page=10621&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> ||
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*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a9a69d24c57"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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0.43 minutes&nbsp;
0.43 minutes&nbsp;
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MG1655: 20314..19811<br />{{GBrowseFigureByCoord|19811|20314|ecoli|MG1655}}
MG1655: 20314..19811<br /><gbrowseImage>
name=NC_000913:19811..20314
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|18811|21314|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|18811|21314|GBrowse(MG1655)}}
   
   
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{{GBrowseFastaLink|ecoli|NC_000913|19811|20314|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|19811|20314|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G0-10570 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G0-10570 EcoCyc Sequence Dump]  
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NC_012967: 1322970..1323473<br />{{GBrowseFigureByCoord|1322970|1323473|REL606|NC_012967}}
NC_012967: 1322970..1323473<br /><gbrowseImage>
name=NC_012967:1322970..1323473
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|1322970|1323473|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|1322970|1323473|GBrowse (REL606)}}
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NC_012967: 4521586..4522089<br />{{GBrowseFigureByCoord|4521586|4522089|REL606|NC_012967}}
NC_012967: 353279..353782<br /><gbrowseImage>
name=NC_012967:353279..353782
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|353279|353782|GBrowse (REL606)}}
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[[REL606]]
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NC_012967: 263041..263544<br /><gbrowseImage>
name=NC_012967:263041..263544
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|263041|263544|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|263041|263544|FASTA Dump}}
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[[REL606]]
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NC_012967: 4550928..4551431<br /><gbrowseImage>
name=NC_012967:4550928..4551431
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|4550928|4551431|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|4550928|4551431|FASTA Dump}}  
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[[REL606]]
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NC_012967: 4521586..4522089<br /><gbrowseImage>
name=NC_012967:4521586..4522089
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|4521586|4522089|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|4521586|4522089|GBrowse (REL606)}}
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NC_012967: 4505357..4505860<br />{{GBrowseFigureByCoord|4505357|4505860|REL606|NC_012967}}
NC_012967: 4505357..4505860<br /><gbrowseImage>
name=NC_012967:4505357..4505860
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|4505357|4505860|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|4505357|4505860|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|4505357|4505860|FASTA Dump}}  
{{GBrowseFastaLink|REL606|NC_012967|4505357|4505860|FASTA Dump}}  
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[[BW2952]]
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NC_012759: 4478031..4478534<br /><gbrowseImage>
name=NC_012759:4478031..4478534
source=BW2952
preset=GeneLocation
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{{GBrowseLink|BW2952|NC_012759|4478031|4478534|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|4478031|4478534|FASTA Dump}}
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[[BW2952]]
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NC_012759: 994837..995340<br /><gbrowseImage>
name=NC_012759:994837..995340
source=BW2952
preset=GeneLocation
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{{GBrowseLink|BW2952|NC_012759|994837|995340|GBrowse (BW2952)}}
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NC_012967: 1193864..1194367<br />{{GBrowseFigureByCoord|1193864|1194367|REL606|NC_012967}}
NC_012967: 1193864..1194367<br /><gbrowseImage>
name=NC_012967:1193864..1194367
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|1193864|1194367|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|1193864|1194367|GBrowse (REL606)}}
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NC_012967: 23540..24043<br />{{GBrowseFigureByCoord|23540|24043|REL606|NC_012967}}
NC_012967: 23540..24043<br /><gbrowseImage>
name=NC_012967:23540..24043
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|23540|24043|GBrowse (REL606)}}
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NC_012967: 3433477..3433980<br />{{GBrowseFigureByCoord|3433477|3433980|REL606|NC_012967}}
NC_012967: 376764..377267<br /><gbrowseImage>
name=NC_012967:376764..377267
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|376764|377267|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|376764|377267|FASTA Dump}}
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[[REL606]]
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NC_012967: 546947..547450<br /><gbrowseImage>
name=NC_012967:546947..547450
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|546947|547450|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|546947|547450|FASTA Dump}}
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NC_012967: 589570..590073<br /><gbrowseImage>
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source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|589570|590073|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|589570|590073|FASTA Dump}}
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[[REL606]]
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NC_012967: 619132..619635<br /><gbrowseImage>
name=NC_012967:619132..619635
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|619132|619635|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|619132|619635|FASTA Dump}}
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[[REL606]]
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NC_012967: 633993..634496<br /><gbrowseImage>
name=NC_012967:633993..634496
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|633993|634496|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|633993|634496|FASTA Dump}}  
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NC_012967: 3433477..3433980<br /><gbrowseImage>
name=NC_012967:3433477..3433980
source=REL606
preset=GeneLocation
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NC_012967: 3023960..3024463<br />{{GBrowseFigureByCoord|3023960|3024463|REL606|NC_012967}}
NC_012967: 3023960..3024463<br /><gbrowseImage>
name=NC_012967:3023960..3024463
source=REL606
preset=GeneLocation
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NC_012967: 2822202..2822705<br />{{GBrowseFigureByCoord|2822202|2822705|REL606|NC_012967}}
NC_012967: 2822202..2822705<br /><gbrowseImage>
name=NC_012967:2822202..2822705
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|2822202|2822705|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|2822202|2822705|GBrowse (REL606)}}
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NC_012967: 2682857..2683360<br />{{GBrowseFigureByCoord|2682857|2683360|REL606|NC_012967}}
NC_012967: 2682857..2683360<br /><gbrowseImage>
name=NC_012967:2682857..2683360
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|2682857|2683360|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|2682857|2683360|GBrowse (REL606)}}
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NC_012967: 241506..242009<br />{{GBrowseFigureByCoord|241506|242009|REL606|NC_012967}}
NC_012967: 241506..242009<br /><gbrowseImage>
name=NC_012967:241506..242009
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|241506|242009|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|241506|242009|GBrowse (REL606)}}
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NC_012967: 2618278..2618781<br />{{GBrowseFigureByCoord|2618278|2618781|REL606|NC_012967}}
NC_012967: 2618278..2618781<br /><gbrowseImage>
name=NC_012967:2618278..2618781
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|2618278|2618781|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|2618278|2618781|GBrowse (REL606)}}
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NC_012967: 2407457..2407960<br />{{GBrowseFigureByCoord|2407457|2407960|REL606|NC_012967}}
NC_012967: 2407457..2407960<br /><gbrowseImage>
name=NC_012967:2407457..2407960
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|2407457|2407960|GBrowse (REL606)}}
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NC_012967: 2262755..2263258<br />{{GBrowseFigureByCoord|2262755|2263258|REL606|NC_012967}}
NC_012967: 2262755..2263258<br /><gbrowseImage>
name=NC_012967:2262755..2263258
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|2262755|2263258|GBrowse (REL606)}}
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NC_012967: 2143079..2143582<br />{{GBrowseFigureByCoord|2143079|2143582|REL606|NC_012967}}
NC_012967: 2143079..2143582<br /><gbrowseImage>
name=NC_012967:2143079..2143582
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|2143079|2143582|GBrowse (REL606)}}
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NC_012967: 2128849..2129352<br />{{GBrowseFigureByCoord|2128849|2129352|REL606|NC_012967}}
NC_012967: 2128849..2129352<br /><gbrowseImage>
name=NC_012967:2128849..2129352
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|2128849|2129352|GBrowse (REL606)}}
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NC_012967: 1460409..1460912<br />{{GBrowseFigureByCoord|1460409|1460912|REL606|NC_012967}}
NC_012967: 1460409..1460912<br /><gbrowseImage>
name=NC_012967:1460409..1460912
source=REL606
preset=GeneLocation
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{{GBrowseLink|REL606|NC_012967|1460409|1460912|GBrowse (REL606)}}
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NC_012967: 1973521..1974024<br /><gbrowseImage>
name=NC_012967:1973521..1974024
source=REL606
preset=GeneLocation
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NC_012967: 2034341..2034844<br />{{GBrowseFigureByCoord|2034341|2034844|REL606|NC_012967}}
NC_012967: 2034341..2034844<br /><gbrowseImage>
name=NC_012967:2034341..2034844
source=REL606
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|REL606|NC_012967|2034341|2034844|GBrowse (REL606)}}
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NC_012967: 3741213..3741716<br /><gbrowseImage>
name=NC_012967:3741213..3741716
source=REL606
preset=GeneLocation
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{{GBrowseFastaLink|REL606|NC_012967|3741213|3741716|FASTA Dump}}  
{{GBrowseFastaLink|REL606|NC_012967|3741213|3741716|FASTA Dump}}  
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[[BW2952]]
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NC_012759: 1178223..1178726<br /><gbrowseImage>
name=NC_012759:1178223..1178726
source=BW2952
preset=GeneLocation
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[[BW2952]]
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NC_012759: 19811..20314<br /><gbrowseImage>
name=NC_012759:19811..20314
source=BW2952
preset=GeneLocation
</gbrowseImage>
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{{GBrowseLink|BW2952|NC_012759|19811|20314|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|19811|20314|FASTA Dump}}
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[[BW2952]]
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NC_012759: 3470194..3470697<br /><gbrowseImage>
name=NC_012759:3470194..3470697
source=BW2952
preset=GeneLocation
</gbrowseImage>
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{{GBrowseLink|BW2952|NC_012759|3470194|3470697|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|3470194|3470697|FASTA Dump}}
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[[BW2952]]
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NC_012759: 952218..952721<br /><gbrowseImage>
name=NC_012759:952218..952721
source=BW2952
preset=GeneLocation
</gbrowseImage>
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{{GBrowseLink|BW2952|NC_012759|952218|952721|GBrowse (BW2952)}}
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&nbsp;
&nbsp;
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W3110: 20314..19811<br />{{GBrowseFigureByCoord|19811|20314|ecoli_W3110|W3110}}
W3110: 20314..19811<br /><gbrowseImage>
name=NC_007779:19811..20314
source=W3110
preset=GeneLocation
</gbrowseImage>
 
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{{GBrowseLink|ecoli_W3110|AC_000091|18811|21314|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|18811|21314|GBrowse(W3110)}}  
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|19811|20314|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|19811|20314|FASTA Dump}}  
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6 minutes&nbsp;
6 minutes&nbsp;
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MG1655: 278905..278402<br />{{GBrowseFigureByCoord|278402|278905|ecoli|MG1655}}
MG1655: 278905..278402<br /><gbrowseImage>
name=NC_000913:278402..278905
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|277402|279905|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|277402|279905|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|278402|278905|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|278402|278905|FASTA Dump}}<br \>  
|-  
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Line 320: Line 656:
&nbsp;
&nbsp;
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W3110: 278905..278402<br />{{GBrowseFigureByCoord|278402|278905|ecoli_W3110|W3110}}
W3110: 278905..278402<br /><gbrowseImage>
name=NC_007779:278402..278905
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|277402|279905|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|277402|279905|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|278402|278905|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|278402|278905|FASTA Dump}}<br \>  
|-  
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Line 331: Line 672:
6.25 minutes&nbsp;
6.25 minutes&nbsp;
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MG1655: 290376..289873<br />{{GBrowseFigureByCoord|289873|290376|ecoli|MG1655}}
MG1655: 290376..289873<br /><gbrowseImage>
name=NC_000913:289873..290376
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|288873|291376|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|288873|291376|GBrowse (MG1655)}}<br \>
|
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*{{GBrowseFastaLink|ecoli|NC_000913|289873|290376|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|289873|290376|FASTA Dump}}<br \>  
|-  
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Line 343: Line 689:
&nbsp;
&nbsp;
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W3110: 290376..289873<br />{{GBrowseFigureByCoord|289873|290376|ecoli_W3110|W3110}}
W3110: 290376..289873<br /><gbrowseImage>
name=NC_007779:289873..290376
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|288873|291376|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|288873|291376|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|289873|290376|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|289873|290376|FASTA Dump}}<br \>  
|-  
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Line 354: Line 705:
22.61 minutes&nbsp;
22.61 minutes&nbsp;
|
|
MG1655: 1049250..1049753<br />{{GBrowseFigureByCoord|1049250|1049753|ecoli|MG1655}}
MG1655: 1049250..1049753<br /><gbrowseImage>
name=NC_000913:1049250..1049753
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|1048250|1050753|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|1048250|1050753|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|1049250|1049753|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|1049250|1049753|FASTA Dump}}<br \>  
|-  
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Line 366: Line 722:
&nbsp;
&nbsp;
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W3110: 1050449..1050952<br />{{GBrowseFigureByCoord|1050449|1050952|ecoli_W3110|W3110}}
W3110: 1050449..1050952<br /><gbrowseImage>
name=NC_007779:1050449..1050952
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|1049449|1051952|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|1049449|1051952|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|1050449|1050952|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|1050449|1050952|FASTA Dump}}<br \>  
|-  
|-  
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Line 377: Line 738:
42.6 minutes&nbsp;
42.6 minutes&nbsp;
|
|
MG1655: 1977045..1976542<br />{{GBrowseFigureByCoord|1976542|1977045|ecoli|MG1655}}
MG1655: 1977045..1976542<br /><gbrowseImage>
name=NC_000913:1976542..1977045
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|1975542|1978045|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|1975542|1978045|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|1976542|1977045|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|1976542|1977045|FASTA Dump}}<br \>  
|-  
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Line 389: Line 755:
&nbsp;
&nbsp;
|
|
W3110: 0..0<br />{{GBrowseFigureByCoord|0|0|ecoli_W3110|W3110}}
W3110: 0..0<br /><gbrowseImage>
name=NC_007779:0..0
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|0|1000|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|0|1000|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|0|0|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|0|0|FASTA Dump}}<br \>  
|-  
|-  
|
|
Line 400: Line 771:
77.2 minutes&nbsp;
77.2 minutes&nbsp;
|
|
MG1655: 3581700..3582203<br />{{GBrowseFigureByCoord|3581700|3582203|ecoli|MG1655}}
MG1655: 3581700..3582203<br /><gbrowseImage>
name=NC_000913:3581700..3582203
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3580700|3583203|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|3580700|3583203|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|3581700|3582203|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|3581700|3582203|FASTA Dump}}<br \>  
|-  
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Line 412: Line 788:
&nbsp;
&nbsp;
|
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W3110: 4056738..4056235<br />{{GBrowseFigureByCoord|4056235|4056738|ecoli_W3110|W3110}}
W3110: 4056738..4056235<br /><gbrowseImage>
name=NC_007779:4056235..4056738
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|4055235|4057738|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|4055235|4057738|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|4056235|4056738|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|4056235|4056738|FASTA Dump}}<br \>  
|-  
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Line 423: Line 804:
97.35 minutes&nbsp;
97.35 minutes&nbsp;
|
|
MG1655: 4516744..4517037<br />{{GBrowseFigureByCoord|4516744|4517037|ecoli|MG1655}}
MG1655: 4516744..4517037<br /><gbrowseImage>
name=NC_000913:4516744..4517037
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|4515744|4518037|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|4515744|4518037|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|4516744|4517037|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|4516744|4517037|FASTA Dump}}<br \>  
|-  
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Line 435: Line 821:
&nbsp;
&nbsp;
|
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W3110: 4523401..4523694<br />{{GBrowseFigureByCoord|4523401|4523694|ecoli_W3110|W3110}}
W3110: 4523401..4523694<br /><gbrowseImage>
name=NC_007779:4523401..4523694
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|4522401|4524694|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|4522401|4524694|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|4523401|4523694|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|4523401|4523694|FASTA Dump}}<br \>  
|-  
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Line 446: Line 837:
97.36 minutes&nbsp;
97.36 minutes&nbsp;
|
|
MG1655: 4517038..4517247<br />{{GBrowseFigureByCoord|4517038|4517247|ecoli|MG1655}}
MG1655: 4517038..4517247<br /><gbrowseImage>
name=NC_000913:4517038..4517247
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|4516038|4518247|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|4516038|4518247|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|4517038|4517247|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|4517038|4517247|FASTA Dump}}<br \>  
|-  
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Line 458: Line 854:
&nbsp;
&nbsp;
|
|
W3110: 4523695..4523904<br />{{GBrowseFigureByCoord|4523695|4523904|ecoli_W3110|W3110}}
W3110: 4523695..4523904<br /><gbrowseImage>
name=NC_007779:4523695..4523904
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|4522695|4524904|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|4522695|4524904|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|4523695|4523904|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|4523695|4523904|FASTA Dump}}<br \>  
|-  
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Line 469: Line 870:
&nbsp;
&nbsp;
|
|
MG1655: 4516744..4517247<br />{{GBrowseFigureByCoord|4516744|4517247|ecoli|MG1655}}
MG1655: 4516744..4517247<br /><gbrowseImage>
name=NC_000913:4516744..4517247
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|4515744|4518247|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|4515744|4518247|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|4516744|4517247|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|4516744|4517247|FASTA Dump}}<br \>  
|-  
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Line 481: Line 887:
&nbsp;
&nbsp;
|
|
W3110: 4523401..4523904<br />{{GBrowseFigureByCoord|4523401|4523904|ecoli_W3110|W3110}}
W3110: 4523401..4523904<br /><gbrowseImage>
name=NC_007779:4523401..4523904
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|4522401|4524904|GBrowse (W3110)}}<br \>
{{GBrowseLink|W3110|NC_007779|4522401|4524904|GBrowse (W3110)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|4523401|4523904|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|W3110|NC_007779|4523401|4523904|FASTA Dump}}<br \>  
|-  
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|
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Line 492: Line 903:
&nbsp;
&nbsp;
|
|
MG1655: 0..0<br />{{GBrowseFigureByCoord|0|0|ecoli|MG1655}}
MG1655: 0..0<br /><gbrowseImage>
name=NC_000913:0..0
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G0-10570 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|0|1000|GBrowse (MG1655)}}<br \>
{{GBrowseLink|MG1655|NC_000913|0|1000|GBrowse (MG1655)}}<br \>
|
|
*{{GBrowseFastaLink|ecoli|NC_000913|0|0|FASTA Dump}}<br \>  
*{{GBrowseFastaLink|MG1655|NC_000913|0|0|FASTA Dump}}<br \>  
|-  
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|
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Line 504: Line 920:
&nbsp;
&nbsp;
|
|
W3110: 2411976..2411473<br />{{GBrowseFigureByCoord|2411473|2411976|ecoli_W3110|W3110}}
W3110: 2411976..2411473<br /><gbrowseImage>
|
name=NC_007779:2411473..2411976
{{GBrowseLink|ecoli_W3110|AC_000091|2410473|2412976|GBrowse (W3110)}}<br \>
source=W3110
|
preset=GeneLocation
*{{GBrowseFastaLink|ecoli_W3110|AC_000091|2411473|2411976|FASTA Dump}}<br \>  
</gbrowseImage>
|-
|
[[REL606]]
|


|
|
NC_012967: 4550928..4551431<br />{{GBrowseFigureByCoord|4550928|4551431|REL606|NC_012967}}
{{GBrowseLink|W3110|NC_007779|2410473|2412976|GBrowse (W3110)}}<br \>
|
|
{{GBrowseLink|REL606|NC_012967|4550928|4551431|GBrowse (REL606)}}
*{{GBrowseFastaLink|W3110|NC_007779|2411473|2411976|FASTA Dump}}<br \>
|
{{GBrowseFastaLink|REL606|NC_012967|4550928|4551431|FASTA Dump}}  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.V46a9a69d24c57&page=10621&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.V46a9a69d24c57&page=10621&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10621.V46a9a69d24c57-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10621.V46a9a69d24c57-->
Line 539: Line 949:
*  
*  
****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46a9a6ac17a2d"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.H46a9a6ac17a2d&page=10621&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.H46a9a6ac17a2d&page=10621&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10621.H46a9a6ac17a2d-->
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Line 561: Line 971:
*  
*  
****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9a6ac580eb"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.S46a9a6ac580eb&page=10621&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10621.S46a9a6ac580eb&page=10621&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10621.S46a9a6ac580eb-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10621.S46a9a6ac580eb-->
Line 573: Line 983:
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.10621.K4e04bdc7e2b98-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K4e04bdc7e2b98"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10621.K4e04bdc7e2b98&page=10621&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.10621.K4e04bdc7e2b98--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
Line 583: Line 1,015:
*  
*  
****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a9a6ad00057"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
Line 601: Line 1,033:


Primer 2:  
Primer 2:  
|-
|
[[:Category:Kohara_Phage:6H3|6H3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=102 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:22B12|22B12]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=103 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:5A5|5A5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=129 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3C7|3C7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=130 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3C7|3C7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=130 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:21C10|21C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=131 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4H11|4H11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=225 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2F1|2F1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=226 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:9C2|9C2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=404 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:10F5|10F5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=615 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:16A5|16A5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=616 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7G7|7G7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=662 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:9H9|9H9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=663 Genobase]
|
PMID:3038334
|-  
|-  
|
|
Line 622: Line 1,171:
Synonyms:zjj-202::Tn10, zji-202::Tn10  
Synonyms:zjj-202::Tn10, zji-202::Tn10  


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*  
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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9a6ad889dc"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-10570 EcoCyc:G0-10570]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6085 ECOCYC:G6085]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG40002 EcoGene:EG40002]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0988 EcoliGenExpDB:b0988]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6138 ECOCYC:G6138]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOO157/new-image?object=Z5491 ECOO157CYC:Z5491]
[http://www.ncbi.nlm.nih.gov/gene?term=944743 GeneID:944743]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4719 EchoBASE:EB4719]
[http://www.ncbi.nlm.nih.gov/gene?term=947698 GeneID:947698]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C4498 ECOL199310CYC:C4498]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6145 ECOCYC:G6145]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000075&formSubmitReturn=1 ASAP:ABE-0000075]
[http://www.ncbi.nlm.nih.gov/gene?term=944950 GeneID:944950]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000906&formSubmitReturn=1 ASAP:ABE-0000906]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6509 ECOCYC:G6509]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000948&formSubmitReturn=1 ASAP:ABE-0000948]
[http://www.ncbi.nlm.nih.gov/gene?term=945009 GeneID:945009]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003338&formSubmitReturn=1 ASAP:ABE-0003338]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7029 ECOCYC:G7029]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006308&formSubmitReturn=1 ASAP:ABE-0006308]
[http://www.ncbi.nlm.nih.gov/gene?term=945867 GeneID:945867]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0011251&formSubmitReturn=1 ASAP:ABE-0011251]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7762 ECOCYC:G7762]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0285084&formSubmitReturn=1 ASAP:ABE-0285084]
[http://www.ncbi.nlm.nih.gov/gene?term=947949 GeneID:947949]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0285085&formSubmitReturn=1 ASAP:ABE-0285085]
[http://www.ncbi.nlm.nih.gov/gene?term=4056034 GeneID:4056034]
|
|
Escherichia coli str. K-12 substr. MG1655


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!|Name!!URL!!Comments
!|Name!!URL!!Comments


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[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]][[Category:Gene_List:REL606]]
[[Category:Genes in the ASKA clone collection]][[Category:Gene_List:REL606]]
[[Category:ins genes]]
[[Category:Gene_List:BW2952]]
[[Category:Gene_List:IS1]]

Latest revision as of 20:36, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

insB-7_2

Mnemonic
Synonyms

insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1[1][2][3]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

0.43 minutes 

MG1655: 20314..19811
<gbrowseImage> name=NC_000913:19811..20314 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1322970..1323473
<gbrowseImage> name=NC_012967:1322970..1323473 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 353279..353782
<gbrowseImage> name=NC_012967:353279..353782 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 263041..263544
<gbrowseImage> name=NC_012967:263041..263544 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4550928..4551431
<gbrowseImage> name=NC_012967:4550928..4551431 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4521586..4522089
<gbrowseImage> name=NC_012967:4521586..4522089 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4505357..4505860
<gbrowseImage> name=NC_012967:4505357..4505860 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4478031..4478534
<gbrowseImage> name=NC_012759:4478031..4478534 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 994837..995340
<gbrowseImage> name=NC_012759:994837..995340 source=BW2952 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1193864..1194367
<gbrowseImage> name=NC_012967:1193864..1194367 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 23540..24043
<gbrowseImage> name=NC_012967:23540..24043 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 376764..377267
<gbrowseImage> name=NC_012967:376764..377267 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 546947..547450
<gbrowseImage> name=NC_012967:546947..547450 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 589570..590073
<gbrowseImage> name=NC_012967:589570..590073 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 619132..619635
<gbrowseImage> name=NC_012967:619132..619635 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 633993..634496
<gbrowseImage> name=NC_012967:633993..634496 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3433477..3433980
<gbrowseImage> name=NC_012967:3433477..3433980 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3023960..3024463
<gbrowseImage> name=NC_012967:3023960..3024463 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2822202..2822705
<gbrowseImage> name=NC_012967:2822202..2822705 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2682857..2683360
<gbrowseImage> name=NC_012967:2682857..2683360 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 241506..242009
<gbrowseImage> name=NC_012967:241506..242009 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2618278..2618781
<gbrowseImage> name=NC_012967:2618278..2618781 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2407457..2407960
<gbrowseImage> name=NC_012967:2407457..2407960 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2262755..2263258
<gbrowseImage> name=NC_012967:2262755..2263258 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2143079..2143582
<gbrowseImage> name=NC_012967:2143079..2143582 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2128849..2129352
<gbrowseImage> name=NC_012967:2128849..2129352 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1460409..1460912
<gbrowseImage> name=NC_012967:1460409..1460912 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1973521..1974024
<gbrowseImage> name=NC_012967:1973521..1974024 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2034341..2034844
<gbrowseImage> name=NC_012967:2034341..2034844 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3741213..3741716
<gbrowseImage> name=NC_012967:3741213..3741716 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1178223..1178726
<gbrowseImage> name=NC_012759:1178223..1178726 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 19811..20314
<gbrowseImage> name=NC_012759:19811..20314 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3470194..3470697
<gbrowseImage> name=NC_012759:3470194..3470697 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 952218..952721
<gbrowseImage> name=NC_012759:952218..952721 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 20314..19811
<gbrowseImage> name=NC_007779:19811..20314 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

6 minutes 

MG1655: 278905..278402
<gbrowseImage> name=NC_000913:278402..278905 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 278905..278402
<gbrowseImage> name=NC_007779:278402..278905 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

6.25 minutes 

MG1655: 290376..289873
<gbrowseImage> name=NC_000913:289873..290376 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 290376..289873
<gbrowseImage> name=NC_007779:289873..290376 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

22.61 minutes 

MG1655: 1049250..1049753
<gbrowseImage> name=NC_000913:1049250..1049753 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1050449..1050952
<gbrowseImage> name=NC_007779:1050449..1050952 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

42.6 minutes 

MG1655: 1977045..1976542
<gbrowseImage> name=NC_000913:1976542..1977045 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 0..0
<gbrowseImage> name=NC_007779:0..0 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

77.2 minutes 

MG1655: 3581700..3582203
<gbrowseImage> name=NC_000913:3581700..3582203 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4056738..4056235
<gbrowseImage> name=NC_007779:4056235..4056738 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.35 minutes 

MG1655: 4516744..4517037
<gbrowseImage> name=NC_000913:4516744..4517037 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523401..4523694
<gbrowseImage> name=NC_007779:4523401..4523694 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.36 minutes 

MG1655: 4517038..4517247
<gbrowseImage> name=NC_000913:4517038..4517247 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523695..4523904
<gbrowseImage> name=NC_007779:4523695..4523904 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

 

MG1655: 4516744..4517247
<gbrowseImage> name=NC_000913:4516744..4517247 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523401..4523904
<gbrowseImage> name=NC_007779:4523401..4523904 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

 

MG1655: 0..0
<gbrowseImage> name=NC_000913:0..0 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2411976..2411473
<gbrowseImage> name=NC_007779:2411473..2411976 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

6H3

Kohara Phage

Genobase

PMID:3038334[5]

22B12

Kohara Phage

Genobase

PMID:3038334[5]

5A5

Kohara Phage

Genobase

PMID:3038334[5]

3C7

Kohara Phage

Genobase

PMID:3038334[5]

3C7

Kohara Phage

Genobase

PMID:3038334[5]

21C10

Kohara Phage

Genobase

PMID:3038334[5]

4H11

Kohara Phage

Genobase

PMID:3038334[5]

2F1

Kohara Phage

Genobase

PMID:3038334[5]

9C2

Kohara Phage

Genobase

PMID:3038334[5]

10F5

Kohara Phage

Genobase

PMID:3038334[5]

16A5

Kohara Phage

Genobase

PMID:3038334[5]

7G7

Kohara Phage

Genobase

PMID:3038334[5]

9H9

Kohara Phage

Genobase

PMID:3038334[5]

zjf-920::Tn10

Linked marker

CAG12019 = CGSC7484[6]

est. P1 cotransduction: 1% [7]
Synonyms:zjh-901::Tn10, zjg-920::Tn10

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[6]

est. P1 cotransduction: 1% [7]
Synonyms:zjj-202::Tn10, zji-202::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

ECOCYC:G6085

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG40002

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6138

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944743

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947698

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6145

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944950

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6509

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945009

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G7029

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945867

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G7762

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947949

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:4056034

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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