insB-7 2:Gene: Difference between revisions

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****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|   id="V46a9a69d24c57"  class=" tableEdit Gene_location_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a9a69d24c57"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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W3110: 20314..19811<br /><gbrowseImage>
W3110: 20314..19811<br /><gbrowseImage>
name=AC_000091:19811..20314
name=NC_007779:19811..20314
source=W3110
source=W3110
preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|18811|21314|GBrowse(W3110)}}  
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name=AC_000091:278402..278905
name=NC_007779:278402..278905
source=W3110
source=W3110
preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|277402|279905|GBrowse (W3110)}}<br \>
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W3110: 290376..289873<br /><gbrowseImage>
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name=AC_000091:289873..290376
name=NC_007779:289873..290376
source=W3110
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preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|288873|291376|GBrowse (W3110)}}<br \>
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W3110: 1050449..1050952<br /><gbrowseImage>
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name=AC_000091:1050449..1050952
name=NC_007779:1050449..1050952
source=W3110
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preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|1049449|1051952|GBrowse (W3110)}}<br \>
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W3110: 0..0<br /><gbrowseImage>
W3110: 0..0<br /><gbrowseImage>
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preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|0|1000|GBrowse (W3110)}}<br \>
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{{GBrowseLink|W3110|AC_000091|4055235|4057738|GBrowse (W3110)}}<br \>
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W3110: 4523401..4523694<br /><gbrowseImage>
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name=AC_000091:4523401..4523694
name=NC_007779:4523401..4523694
source=W3110
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preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|4522401|4524694|GBrowse (W3110)}}<br \>
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W3110: 4523695..4523904<br /><gbrowseImage>
W3110: 4523695..4523904<br /><gbrowseImage>
name=AC_000091:4523695..4523904
name=NC_007779:4523695..4523904
source=W3110
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preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|4522695|4524904|GBrowse (W3110)}}<br \>
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W3110: 4523401..4523904<br /><gbrowseImage>
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name=AC_000091:4523401..4523904
name=NC_007779:4523401..4523904
source=W3110
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preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|4522401|4524904|GBrowse (W3110)}}<br \>
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W3110: 2411976..2411473<br /><gbrowseImage>
W3110: 2411976..2411473<br /><gbrowseImage>
name=AC_000091:2411473..2411976
name=NC_007779:2411473..2411976
source=W3110
source=W3110
preset=GeneLocation
preset=GeneLocation
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{{GBrowseLink|W3110|AC_000091|2410473|2412976|GBrowse (W3110)}}<br \>
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****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|   id="H46a9a6ac17a2d"  class=" tableEdit Gene_sequence_features_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46a9a6ac17a2d"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{| {{Prettytable}} id="S46a9a6ac580eb"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9a6ac580eb"  class=" tableEdit Gene_allele_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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****************************************************************************************** -->{{Genetic_interaction_help}}
****************************************************************************************** -->{{Genetic_interaction_help}}
{|   id="K4e04bdc7e2b98"  class=" tableEdit Genetic_interaction_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K4e04bdc7e2b98"  class=" tableEdit Genetic_interaction_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|   id="G46a9a6ad00057"  class=" tableEdit Gene_resource_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a9a6ad00057"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=130 Genobase]
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=130 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3C7|3C7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=130 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:21C10|21C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=131 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4H11|4H11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=225 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2F1|2F1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=226 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:9C2|9C2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=404 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:10F5|10F5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=615 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:16A5|16A5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=616 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7G7|7G7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=662 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:9H9|9H9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=663 Genobase]
|
|
PMID:3038334  
PMID:3038334  
Line 1,089: Line 1,170:
est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> <br />  
est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> <br />  
Synonyms:zjj-202::Tn10, zji-202::Tn10  
Synonyms:zjj-202::Tn10, zji-202::Tn10  
|-
|
[[:Category:Kohara_Phage:3C7|3C7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=130 Genobase]
|
PMID:3038334


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="L46a9a6ad889dc"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9a6ad889dc"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-10570 EcoCyc:G0-10570]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6085 ECOCYC:G6085]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG40002 EcoGene:EG40002]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0988 EcoliGenExpDB:b0988]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6138 ECOCYC:G6138]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOO157/new-image?object=Z5491 ECOO157CYC:Z5491]
[http://www.ncbi.nlm.nih.gov/gene?term=944743 GeneID:944743]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4719 EchoBASE:EB4719]
[http://www.ncbi.nlm.nih.gov/gene?term=947698 GeneID:947698]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
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|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C4498 ECOL199310CYC:C4498]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6145 ECOCYC:G6145]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000075&formSubmitReturn=1 ASAP:ABE-0000075]
[http://www.ncbi.nlm.nih.gov/gene?term=944950 GeneID:944950]
|
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Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000906&formSubmitReturn=1 ASAP:ABE-0000906]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6509 ECOCYC:G6509]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000948&formSubmitReturn=1 ASAP:ABE-0000948]
[http://www.ncbi.nlm.nih.gov/gene?term=945009 GeneID:945009]
|
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Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003338&formSubmitReturn=1 ASAP:ABE-0003338]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7029 ECOCYC:G7029]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006308&formSubmitReturn=1 ASAP:ABE-0006308]
[http://www.ncbi.nlm.nih.gov/gene?term=945867 GeneID:945867]
|
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Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0011251&formSubmitReturn=1 ASAP:ABE-0011251]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7762 ECOCYC:G7762]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0285084&formSubmitReturn=1 ASAP:ABE-0285084]
[http://www.ncbi.nlm.nih.gov/gene?term=947949 GeneID:947949]
|
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Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0285085&formSubmitReturn=1 ASAP:ABE-0285085]
[http://www.ncbi.nlm.nih.gov/gene?term=4056034 GeneID:4056034]
|
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Escherichia coli str. K-12 substr. MG1655


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{|   id="P46a673dcb418c"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46a673dcb418c"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
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!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 20:36, 19 September 2013

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

insB-7_2

Mnemonic
Synonyms

insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1[1][2][3]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

0.43 minutes 

MG1655: 20314..19811
<gbrowseImage> name=NC_000913:19811..20314 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1322970..1323473
<gbrowseImage> name=NC_012967:1322970..1323473 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 353279..353782
<gbrowseImage> name=NC_012967:353279..353782 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 263041..263544
<gbrowseImage> name=NC_012967:263041..263544 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4550928..4551431
<gbrowseImage> name=NC_012967:4550928..4551431 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4521586..4522089
<gbrowseImage> name=NC_012967:4521586..4522089 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4505357..4505860
<gbrowseImage> name=NC_012967:4505357..4505860 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4478031..4478534
<gbrowseImage> name=NC_012759:4478031..4478534 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 994837..995340
<gbrowseImage> name=NC_012759:994837..995340 source=BW2952 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1193864..1194367
<gbrowseImage> name=NC_012967:1193864..1194367 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 23540..24043
<gbrowseImage> name=NC_012967:23540..24043 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 376764..377267
<gbrowseImage> name=NC_012967:376764..377267 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 546947..547450
<gbrowseImage> name=NC_012967:546947..547450 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 589570..590073
<gbrowseImage> name=NC_012967:589570..590073 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 619132..619635
<gbrowseImage> name=NC_012967:619132..619635 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 633993..634496
<gbrowseImage> name=NC_012967:633993..634496 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3433477..3433980
<gbrowseImage> name=NC_012967:3433477..3433980 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3023960..3024463
<gbrowseImage> name=NC_012967:3023960..3024463 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2822202..2822705
<gbrowseImage> name=NC_012967:2822202..2822705 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2682857..2683360
<gbrowseImage> name=NC_012967:2682857..2683360 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 241506..242009
<gbrowseImage> name=NC_012967:241506..242009 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2618278..2618781
<gbrowseImage> name=NC_012967:2618278..2618781 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2407457..2407960
<gbrowseImage> name=NC_012967:2407457..2407960 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2262755..2263258
<gbrowseImage> name=NC_012967:2262755..2263258 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2143079..2143582
<gbrowseImage> name=NC_012967:2143079..2143582 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2128849..2129352
<gbrowseImage> name=NC_012967:2128849..2129352 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1460409..1460912
<gbrowseImage> name=NC_012967:1460409..1460912 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1973521..1974024
<gbrowseImage> name=NC_012967:1973521..1974024 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2034341..2034844
<gbrowseImage> name=NC_012967:2034341..2034844 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3741213..3741716
<gbrowseImage> name=NC_012967:3741213..3741716 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1178223..1178726
<gbrowseImage> name=NC_012759:1178223..1178726 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 19811..20314
<gbrowseImage> name=NC_012759:19811..20314 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3470194..3470697
<gbrowseImage> name=NC_012759:3470194..3470697 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 952218..952721
<gbrowseImage> name=NC_012759:952218..952721 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 20314..19811
<gbrowseImage> name=NC_007779:19811..20314 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

6 minutes 

MG1655: 278905..278402
<gbrowseImage> name=NC_000913:278402..278905 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 278905..278402
<gbrowseImage> name=NC_007779:278402..278905 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

6.25 minutes 

MG1655: 290376..289873
<gbrowseImage> name=NC_000913:289873..290376 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 290376..289873
<gbrowseImage> name=NC_007779:289873..290376 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

22.61 minutes 

MG1655: 1049250..1049753
<gbrowseImage> name=NC_000913:1049250..1049753 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1050449..1050952
<gbrowseImage> name=NC_007779:1050449..1050952 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

42.6 minutes 

MG1655: 1977045..1976542
<gbrowseImage> name=NC_000913:1976542..1977045 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 0..0
<gbrowseImage> name=NC_007779:0..0 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

77.2 minutes 

MG1655: 3581700..3582203
<gbrowseImage> name=NC_000913:3581700..3582203 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4056738..4056235
<gbrowseImage> name=NC_007779:4056235..4056738 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.35 minutes 

MG1655: 4516744..4517037
<gbrowseImage> name=NC_000913:4516744..4517037 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523401..4523694
<gbrowseImage> name=NC_007779:4523401..4523694 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.36 minutes 

MG1655: 4517038..4517247
<gbrowseImage> name=NC_000913:4517038..4517247 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523695..4523904
<gbrowseImage> name=NC_007779:4523695..4523904 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

 

MG1655: 4516744..4517247
<gbrowseImage> name=NC_000913:4516744..4517247 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4523401..4523904
<gbrowseImage> name=NC_007779:4523401..4523904 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

 

MG1655: 0..0
<gbrowseImage> name=NC_000913:0..0 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2411976..2411473
<gbrowseImage> name=NC_007779:2411473..2411976 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

6H3

Kohara Phage

Genobase

PMID:3038334[5]

22B12

Kohara Phage

Genobase

PMID:3038334[5]

5A5

Kohara Phage

Genobase

PMID:3038334[5]

3C7

Kohara Phage

Genobase

PMID:3038334[5]

3C7

Kohara Phage

Genobase

PMID:3038334[5]

21C10

Kohara Phage

Genobase

PMID:3038334[5]

4H11

Kohara Phage

Genobase

PMID:3038334[5]

2F1

Kohara Phage

Genobase

PMID:3038334[5]

9C2

Kohara Phage

Genobase

PMID:3038334[5]

10F5

Kohara Phage

Genobase

PMID:3038334[5]

16A5

Kohara Phage

Genobase

PMID:3038334[5]

7G7

Kohara Phage

Genobase

PMID:3038334[5]

9H9

Kohara Phage

Genobase

PMID:3038334[5]

zjf-920::Tn10

Linked marker

CAG12019 = CGSC7484[6]

est. P1 cotransduction: 1% [7]
Synonyms:zjh-901::Tn10, zjg-920::Tn10

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[6]

est. P1 cotransduction: 1% [7]
Synonyms:zjj-202::Tn10, zji-202::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

ECOCYC:G6085

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG40002

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6138

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944743

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947698

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6145

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944950

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6509

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945009

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G7029

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945867

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G7762

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947949

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:4056034

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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