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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	yqeF
Gene Synonym(s)	ECK2842, b2844, JW5453^[1], JW5453
Product Desc.	predicted acyltransferase^[2]^[3] Acetyl-CoA acetyltransferase homolog, function unknown^[4]
Product Synonyms(s)	predicted acyltransferase^[1], B2844^[2]^[1], YqeF^[2]^[1] , ECK2842, JW5453, b2844
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yqeF^[2]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	yqeF
Mnemonic	Systematic nomenclature
Synonyms	ECK2842, b2844, JW5453^[1], JW5453
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	64.28 minutes	MG1655: 2983614..2982433 <gbrowseImage> name=NC_000913:2982433..2983614 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2880213..2879032 <gbrowseImage> name=NC_012967:2879032..2880213 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2869581..2870762 <gbrowseImage> name=NC_012759:2869581..2870762 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2984248..2983067 <gbrowseImage> name=NC_007779:2983067..2984248 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 3077484..3076303 <gbrowseImage> name=NC_010473:3076303..3077484 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
ΔyqeF (Keio:JW5453)	deletion	deletion	PMID:16738554	Shigen CGSC11398^[5]
ΔyqeF769::kan			PMID:16738554	CGSC:105964
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW5453	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCAAAGACGTTGTGATTGTCGG Primer 2:CCTTCGTCACGTTCAATGGTCAA
12H3	Kohara Phage	Genobase	PMID:3038334
recD1901::Tn10	Linked marker	CAG12135 = CGSC7429^[5]	est. P1 cotransduction: 29% ^[6]
speA210::Tn10	Linked marker	CAG12168 = CGSC7431^[5]	est. P1 cotransduction: % ^[6] Synonyms:zgd-210::Tn10, zgf-210::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7464	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13097	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004027	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947324	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2900	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009335	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	YqeF
Synonyms	predicted acyltransferase^[1], B2844^[2]^[1], YqeF^[2]^[1] , ECK2842, JW5453, b2844
Product description	predicted acyltransferase^[2]^[3] Acetyl-CoA acetyltransferase homolog, function unknown^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016038	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016039	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003985	acetyl-CoA C-acetyltransferase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.3.1.9	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0086	C	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002155	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016038	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016039	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020610	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020613	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020615	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020616	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020617	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008415	acyltransferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0012	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016740	transferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002155	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020610	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020613	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020615	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020616	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020617	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008150	biological process	n/a	ND: No biological Data available		P		Missing: reference
	GO:0003674	molecular function	n/a	ND: No biological Data available		F		Missing: reference
	GO:0005575	cellular component	n/a	ND: No biological Data available		C		Missing: reference
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	cspC	PMID:19402753	LCMS(ID Probability):99.6
Protein	acpP	PMID:19402753	LCMS(ID Probability):99.6
Protein	mukB	PMID:19402753	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MMKDVVIVGA LRTPIGCFRG ALAGHSAVEL GSLVVKALIE RTGVPAYAVD EVILGQVLTA GAGQNPARQS AIKGGLPNSV SAITINDVCG SGLKALHLAT QAIQCGEADI VIAGGQENMS RAPHVLTDSR TGAQLGNSQL VDSLVHDGLW DAFNDYHIGV TAENLAREYG ISRQLQDAYA LSSQQKARAA IDAGRFKDEI VPVMTQSNGQ TLVVDTDEQP RTDASAEGLA RLNPSFDSLG SVTAGNASSI NDGAAAVMMM SEAKARALNL PVLARIRAFA SVGVDPALMG IAPVYATRRC LERVGWQLAE VDLIEANEAF AAQALSVGKM LEWDERRVNV NGGAIALGHP IGASGCRILV SLVHEMVKRN ARKGLATLCI GGGQGVALTI ERDE
Length	394
Mol. Wt	41.149 kDa
pI	5.7 (calculated)
Extinction coefficient	23,950 - 24,700 (calc based on 5 Y, 3 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	1..262	PF00108 Thiolase, N-terminal domain	PMID:19920124
Domain	269..391	PF02803 Thiolase, C-terminal domain	PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yqeF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:90111494	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947324	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009335	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:Q46939	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G7464	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13097	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947324	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004027	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2900	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	9.613+/-0.104	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.051651143	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	226	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	116	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	102	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
yqeF
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2983594..2983634 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2844 (EcoliWiki Page)	NCBI GEO profiles for yqeF
microarray	GenExpDB:b2844 (EcoliWiki Page)	Summary of data for yqeF from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to yqeF Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7464	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2900	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2844
EcoGene	EcoGene:EG13097	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004027	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009335	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000020372 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000025799 (score: 1.000; bootstrap: 48%)	From Inparanoid:20070104
Arabidopsis thaliana	AT5G47720 (score: 1.000; bootstrap: 95%) AT5G48230 (score: 0.666)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000003660 (score: 1.000; bootstrap: 99%) ENSBTAP00000012548 (score: 0.634)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00042428 (score: 1.000; bootstrap: 64%)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00009952 (score: 1.000; bootstrap: 72%)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000001037 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000019425 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-990714-22 (score: 1.000; bootstrap: 99%) ZDB-CDNA-040425-5 (score: 1.000; bootstrap: 99%) ZDB-CDNA-051120-30 (score: 0.158) ZDB-GENE-051120-66 (score: 0.158)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0231621 (score: 1.000; bootstrap: 94%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0035203 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA21576-PA (score: 1.000; bootstrap: 98%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000019037 (score: 1.000; bootstrap: 97%)	From Inparanoid:20070104
Homo sapiens	ENSP00000239584 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000016873 (score: 1.000; bootstrap: 78%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000008873 (score: 1.000; bootstrap: 98%)	From Inparanoid:20070104
Mus musculus	MGI:87871 (score: 1.000; bootstrap: 99%) MGI:109182 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Oryza gramene	Q6K3Z3 (score: 1.000; bootstrap: 93%) Q9ASK5 (score: 0.679) Q9XHH0 (score: 0.111)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000032016 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000018934 (score: 1.000; bootstrap: 99%) ENSRNOP00000048489 (score: 0.628) ENSRNOP00000041632 (score: 0.422)	From Inparanoid:20070104
Saccharomyces cerevisiae	YPL028W (score: 1.000; bootstrap: 97%)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPBC2159c (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000180335 (score: 1.000; bootstrap: 94%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00023110001 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000023800 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Shigella flexneri	YQEF	From SHIGELLACYC
E. coli O157	YQEF	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Superfamily (EcoliWiki Page)	SUPERFAMILY:53901
Superfamily (EcoliWiki Page)	SUPERFAMILY:53901
Panther (EcoliWiki Page)	PTHR18919:SF22
Pfam (EcoliWiki Page)	PF00108 Thiolase, N-terminal domain
Pfam (EcoliWiki Page)	PF02803 Thiolase, C-terminal domain
EcoCyc	EcoCyc:G7464	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13097	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004027	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2900	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009335	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

yqeF:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to yqeF Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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