yciX:On One Page

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Standard Name
Gene Synonym(s)
Product Desc.
Product Synonyms(s)
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	yciX
Mnemonic
Synonyms	yciX_2, b4523, ECK1270
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Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
BW2952		NC_012759: 1224164..1224331 <gbrowseImage> name=NC_012759:1224164..1224331 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
MG1655	28.74 minutes	MG1655: 1333294..1333482 <gbrowseImage> name=NC_000913:1333294..1333482 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse (MG1655)	FASTA Dump
W3110		W3110: 1336984..1337172 <gbrowseImage> name=NC_007779:1336984..1337172 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse (W3110)	FASTA Dump
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Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
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Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	ECOCYC:G0-10513	Escherichia coli str. K-12 substr. MG1655
EcoGene (EcoliWiki Page)	EcoGene:EG14351	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:1450257	Escherichia coli str. K-12 substr. MG1655
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Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name
Synonyms
Product description
EC number (for enzymes)
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Function

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Gene Ontology

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence
Length
Mol. Wt
pI
Extinction coefficient
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes References edit table

<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures Models edit table

Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table Expression [back to top] Overview Intracellular Levels [back to top] <protect> See Help:Cellular levels Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s) Protein E. coli K-12 MG1655 744 molecules/cell/generation Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other: Ribosome Profiling PMID:24766808 Protein E. coli K-12 MG1655 642 molecules/cell/generation Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other: Ribosome Profiling PMID:24766808 Protein E. coli K-12 MG1655 272a molecules/cell/generation Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other: Ribosome Profiling Low confidence in the sequencing data set. PMID:24766808 edit table </protect> Notes Transcription and Transcriptional Regulation [back to top] <protect> See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki. Transcription unit(s) edit table || Figure courtesy of RegulonDB |} </protect> Notes Translation and Regulation of Translation [back to top] { <gbrowseImage> name=NC_000913:1333294..1333334 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> Notes Turnover and Regulation of Turnover Notes Experimental [back to top] Mutations Affecting Expression <protect><protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki. Allele Name Mutation Phenotype Reference edit table </protect> Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki. Type Reference Notes edit table </protect> Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. Resource Name Resource Type Description Source Notes edit table Notes Accessions Related to yciX Expression [back to top] <protect><protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table </protect> Notes Links [back to top] <protect> Name URL Comments edit table </protect> Evolution [back to top] Homologs in Other Organisms [back to top] <protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki. Organism Homologs (Statistics) Comments edit table </protect> Do-It-Yourself Web Tools BLAST CDD InParanoid YOGY Notes Families [back to top] <protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki. Database Accession Notes edit table </protect> Notes Links [back to top] <protect> Name URL Comments edit table </protect>