yciX:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Standard Name | |
|---|---|
| Gene Synonym(s) | |
| Product Desc. | |
| Product Synonyms(s) | |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
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Notes
Gene
Nomenclature
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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
yciX |
|---|---|
| Mnemonic | |
| Synonyms |
yciX_2, b4523, ECK1270 |
| edit table |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_012759: 1224164..1224331 |
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|
MG1655 |
28.74 minutes |
MG1655: 1333294..1333482 |
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|
W3110 |
|
W3110: 1336984..1337172 |
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| edit table |
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
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See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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Product(s)
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name | |
|---|---|
| Synonyms | |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
Gene Ontology
<protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
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Interactions
<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
Physical Properties
<protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence | |
| Length | |
| Mol. Wt | |
| pI | |
| Extinction coefficient |
|
| edit table |
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Domains/Motifs/Modification Sites
|
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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<motif_map/> |
Structure<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
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Structure figures<protect> | |||
Notes
Gene Product Resources
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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Expression
Overview
Intracellular Levels
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See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
|
Protein |
E. coli K-12 MG1655 |
744 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
|
Protein |
E. coli K-12 MG1655 |
642 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
|
Protein |
E. coli K-12 MG1655 |
272a |
molecules/cell/generation |
|
Ribosome Profiling |
Low confidence in the sequencing data set. |
PMID: 24766808 |
| edit table |
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Notes
Transcription and Transcriptional Regulation
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| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
 Figure courtesy of RegulonDB |
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Notes
Translation and Regulation of Translation
{<protect><gbrowseImage>
name=NC_000913:1333294..1333334
source=MG1655
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
Notes
Turnover and Regulation of Turnover
Notes
Experimental
Mutations Affecting Expression
<protect><protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
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Expression Studies
<protect><protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
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Expression Resources
<protect><protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Accessions Related to yciX Expression
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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Evolution
Homologs in Other Organisms
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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
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Do-It-Yourself Web Tools
Notes
Families
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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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