tyrT:Gene
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
<protect>
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
tyrT |
|---|---|
| Mnemonic |
Tyrosine |
| Synonyms |
ECK1226, b1231, JWR0029, Su-3, Su-4, suI_III, su_III, supC, supF, supO, tyrTalpha, su(c), suIII, supFsupO[1][2], su, supFsupO |
| edit table |
</protect>
Notes
Location(s) and DNA Sequence
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
27.73 minutes |
MG1655: 1286845..1286761 |
||
|
NC_012967: 1287332..1287416 |
||||
|
NC_012759: 1175482..1175566 |
||||
|
W3110 |
|
W3110: 1289199..1289115 |
||
|
DH10B: 1327086..1327002 |
||||
| edit table |
</protect>
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
<protect></protect>
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
tyrT70(OS) |
ochre (UAA) suppressor |
||||||
|
tyrT58(AS) |
amber (UAG) suppressor |
also known as supF58 | |||||
|
tyrT0(OS & AS) |
|||||||
|
tyrT66(AS) |
amber (UAG) suppressor |
||||||
|
tyrT47(OS) |
ochre (UAA) suppressor |
||||||
|
tyrT91(ts, OS) |
"temperature sensitive, ochre (UAA) suppressor)" |
||||||
|
tyrT77(AS) |
amber (UAG) suppressor |
||||||
|
tyrT181(ts, AS) |
"temperature sensitive, amber (UAG) suppressor" |
||||||
|
tyrT35(OS) |
ochre (UAA) suppressor |
||||||
|
tyrT34(AS) |
amber (UAG) suppressor |
||||||
|
tyrT666(ts, AS) |
"temperature sensitive, amber (UAG) suppressor" |
||||||
|
tyrT5888(AS) |
amber (UAG) suppressor |
||||||
|
tyrT94(AS) |
amber (UAG) suppressor |
||||||
|
tyrT9999(ts, AS) |
"temperature sensitive, amber (UAG) suppressor" |
||||||
|
tyrTA81(TS) |
Growth Phenotype |
carries a typ(am) mutation so it recognizes stop codons and is non-functioning at 42C in the absence of tryptophan |
| ||||
| edit table |
<protect></protect>
Notes
Genetic Interactions
<protect>
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
|
Kohara Phage |
|||
|
Kohara Phage |
|||
|
Linked marker |
est. P1 cotransduction: 8% [10] | ||
|
Linked marker |
est. P1 cotransduction: 55% [10] | ||
| edit table |
<protect></protect>
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
<protect></protect>
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Beckman, D & Cooper, S (1973) Temperature-sensitive nonsense mutations in essential genes of Escherichia coli. J. Bacteriol. 116 1336-42 PubMed
- ↑ Reiner, AM (1969) Genetic locus for ribonuclease I in Escherichia coli. J. Bacteriol. 97 1522-3 PubMed
- ↑ Hussain, K et al. (1987) ParD: a new gene coding for a protein required for chromosome partitioning and septum localization in Escherichia coli. Mol. Microbiol. 1 73-81 PubMed
- ↑ Smith, JD et al. (1970) More mutant tyrosine transfer ribonucleic acids. J. Mol. Biol. 54 1-14 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 8.0 8.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 9.0 9.1 CGSC: The Coli Genetics Stock Center
- ↑ 10.0 10.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
