serS:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

serS

Gene Synonym(s)

ECK0884, b0893, JW0876[1], JW0876

Product Desc.

seryl-tRNA synthetase[2][3];

Component of SERS-CPLX[2]

Serine--tRNA ligase; serine hydroxamate resistance[4]

Product Synonyms(s)

seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine[1], B0893[2][1], SerS[2][1] , ECK0884, JW0876, b0893

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): serS[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

serS

Mnemonic

Serine

Synonyms

ECK0884, b0893, JW0876[1], JW0876

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

20.23 minutes 

MG1655: 938651..939943
<gbrowseImage> name=NC_000913:938651..939943 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 956521..957813
<gbrowseImage> name=NC_012967:956521..957813 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 841619..842911
<gbrowseImage> name=NC_012759:841619..842911 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 939850..941142
<gbrowseImage> name=NC_007779:939850..941142 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 992579..993871
<gbrowseImage> name=NC_010473:992579..993871 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

serSE355Q

E355Q

Loss of serine activation activity

seeded from UniProt:P0A8L1

serS14(ts)

temperature sensitive

CGSC:10980

serS15(ts)

temperature sensitive

CGSC:8401

serS29

CGSC:14060

serS30

CGSC:17197

serS16

CGSC:27942


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0876

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCTCGATCCCAATCTGCTGCG

Primer 2:CCGCCAATATATTCCAGTCCGTT

E6H3

Kohara Phage

Genobase

PMID:3038334

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[5]

est. P1 cotransduction: % [6]
Synonyms:zbi-29::Tn10

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[5]

est. P1 cotransduction: 77% [6]
Synonyms:zbj-1230::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10947

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10947

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000936

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945506

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0940

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003038

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SerS

Synonyms

seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine[1], B0893[2][1], SerS[2][1] , ECK0884, JW0876, b0893

Product description

seryl-tRNA synthetase[2][3];

Component of SERS-CPLX[2]

Serine--tRNA ligase; serine hydroxamate resistance[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002314

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002317

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006195

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010978

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015866

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018156

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004828

serine-tRNA ligase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00176

F

Seeded from EcoCyc (v14.0)

complete

GO:0004828

serine-tRNA ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002317

F

Seeded from EcoCyc (v14.0)

complete

GO:0004828

serine-tRNA ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015866

F

Seeded from EcoCyc (v14.0)

complete

GO:0004828

serine-tRNA ligase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.1.1.11

F

Seeded from EcoCyc (v14.0)

complete

GO:0004828

serine-tRNA ligase activity

PMID:7537870

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00176

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002314

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002317

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006195

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015866

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018156

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002314

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002317

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006195

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015866

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018156

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0648

P

Seeded from EcoCyc (v14.0)

complete

GO:0006434

seryl-tRNA aminoacylation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00176

P

Seeded from EcoCyc (v14.0)

complete

GO:0006434

seryl-tRNA aminoacylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002317

P

Seeded from EcoCyc (v14.0)

complete

GO:0006434

seryl-tRNA aminoacylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015866

P

Seeded from EcoCyc (v14.0)

complete

GO:0006434

seryl-tRNA aminoacylation

PMID:7537870

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0016260

selenocysteine biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00176

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of SERS-CPLX

could be indirect

Protein

gatZ

PMID:16606699

Experiment(s):EBI-1138290

Protein

groL

PMID:16606699

Experiment(s):EBI-1138290

Protein

recF

PMID:15690043

Experiment(s):EBI-890485

Protein

yeiR

PMID:15690043

Experiment(s):EBI-890485

Protein

yfjD

PMID:15690043

Experiment(s):EBI-890485

Protein

bcsB

PMID:15690043

Experiment(s):EBI-890485

Protein

yjfN

PMID:15690043

Experiment(s):EBI-890485

Protein

recF

PMID:19402753

LCMS(ID Probability):99.0

Protein

yeiR

PMID:19402753

LCMS(ID Probability):99.0

Protein

bcsB

PMID:19402753

LCMS(ID Probability):99.0

Protein

yjfN

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLDPNLLRNE PDAVAEKLAR RGFKLDVDKL GALEERRKVL QVKTENLQAE RNSRSKSIGQ
AKARGEDIEP LRLEVNKLGE ELDAAKAELD ALQAEIRDIA LTIPNLPADE VPVGKDENDN
VEVSRWGTPR EFDFEVRDHV TLGEMHSGLD FAAAVKLTGS RFVVMKGQIA RMHRALSQFM
LDLHTEQHGY SENYVPYLVN QDTLYGTGQL PKFAGDLFHT RPLEEEADTS NYALIPTAEV
PLTNLVRGEI IDEDDLPIKM TAHTPCFRSE AGSYGRDTRG LIRMHQFDKV EMVQIVRPED
SMAALEEMTG HAEKVLQLLG LPYRKIILCT GDMGFGACKT YDLEVWIPAQ NTYREISSCS
NVWDFQARRM QARCRSKSDK KTRLVHTLNG SGLAVGRTLV AVMENYQQAD GRIEVPEVLR
PYMNGLEYIG
Length

430

Mol. Wt

48.414 kDa

pI

5.3 (calculated)

Extinction coefficient

34,380 - 35,005 (calc based on 12 Y, 3 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..107

PF02403 Seryl-tRNA synthetase N-terminal domain

PMID:19920124

Domain

172..350

PF00587 tRNA synthetase class II core domain (G, H, P, S and T)

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=serS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128860

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945506

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003038

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8L1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10947

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10947

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945506

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000936

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0940

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.91E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

168.148+/-1.08

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.19581+/-0.01105

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.24380805

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

11805

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2024

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

8294

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

serS

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:938631..938671 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0893 (EcoliWiki Page)

NCBI GEO profiles for serS

microarray

GenExpDB:b0893 (EcoliWiki Page)

Summary of data for serS from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to serS Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10947

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0940

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0893

EcoGene

EcoGene:EG10947

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000936

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003038

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011987 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000024284 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G11870 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017232 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026302 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00005663 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000029393 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018981 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040831-1 (score: 1.000; bootstrap: 77%)
  • ZDB-CDNA-040926-5 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231305 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031497 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14420-PA (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000234677 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028755 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002616 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:102809 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Oryza gramene

  • O82110 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000001802 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000027449 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR011W (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC29A45 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000128308 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00002726001 (score: 1.000; bootstrap: 85%)
  • GSTENP00001554001 (score: 0.425)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000041606 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SERS

From SHIGELLACYC

E. coli O157

SERS

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:46589

Panther (EcoliWiki Page)

PTHR11778:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55681

Pfam (EcoliWiki Page)

PF02403 Seryl-tRNA synthetase N-terminal domain

Pfam (EcoliWiki Page)

PF00587 tRNA synthetase class II core domain (G, H, P, S and T)

EcoCyc

EcoCyc:EG10947

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10947

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000936

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0940

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003038

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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