katG:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

katG

Gene Synonym(s)

ECK3934, b3942, JW3914[1], JW3914

Product Desc.

KatG[2][3];

Component of hydroperoxidase I[2][3]

Catalase-hydrogen peroxidase I[4]

Product Synonyms(s)

catalase/hydroperoxidase HPI(I)[1], B3942[2][1], KatG[2][1] , ECK3934, JW3914, b3942

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): katG[2], OP00043

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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With AhpCF, KatG protects aerobic, phosphate-starved cells from oxidative damage. N-terminus is reportedly blocked (Triggs-Raine et al, 1988.) Binds TrxA (Kumar, 2004). KatG is also a tellurite reductase (Calderon, 2006).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

katG

Mnemonic

Catalase

Synonyms

ECK3934, b3942, JW3914[1], JW3914

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

89.05 minutes 

MG1655: 4131858..4134038
<gbrowseImage> name=NC_000913:4131858..4134038 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4113942..4116122
<gbrowseImage> name=NC_012967:4113942..4116122 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4021527..4023707
<gbrowseImage> name=NC_012759:4021527..4023707 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3502846..3500666
<gbrowseImage> name=NC_007779:3500666..3502846 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4231555..4233735
<gbrowseImage> name=NC_010473:4231555..4233735 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔkatG (Keio:JW3914)

deletion

deletion

PMID:16738554

Shigen
CGSC10827[5]

katG15

CGSC:19382

katG16

CGSC:19384

katG17::Tn10

CGSC:19386

ΔkatG729::kan

PMID:16738554

CGSC:101596


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3914

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGCACGTCAGACGATATCCA

Primer 2:CCaAGCAGGTCGAAACGGTCGAG

6D8

Kohara Phage

Genobase

PMID:3038334

12E3

Kohara Phage

Genobase

PMID:3038334

zih-35::Tn10

Linked marker

CAG18495 = CGSC7467[5]

est. P1 cotransduction: 2% [6]

pflD501::Tn10

Linked marker

CAG18477 = CGSC7470[5]

est. P1 cotransduction: 68% [6]
Synonyms:zij-501::Tn10 nnnCAG18477 also carries metF79(Am) (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10511

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10511

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000504

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948431

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0506

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012901

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

KatG

Synonyms

catalase/hydroperoxidase HPI(I)[1], B3942[2][1], KatG[2][1] , ECK3934, JW3914, b3942

Product description

KatG[2][3];

Component of hydroperoxidase I[2][3]

Catalase-hydrogen peroxidase I[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004601

peroxidase activity

PMID:3886630 PMID:15280362

IDA: Inferred from Direct Assay

F

complete

GO:0016491

oxidoreductase activity

PMID:3886630 PMID:15280362

IDA: Inferred from Direct Assay

F

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004096

catalase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01961

F

Seeded from EcoCyc (v14.0)

complete

GO:0004096

catalase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000763

F

Seeded from EcoCyc (v14.0)

complete

GO:0004096

catalase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.11.1.6

F

Seeded from EcoCyc (v14.0)

complete

GO:0004601

peroxidase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01961

F

Seeded from EcoCyc (v14.0)

complete

GO:0004601

peroxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000763

F

Seeded from EcoCyc (v14.0)

complete

GO:0004601

peroxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002016

F

Seeded from EcoCyc (v14.0)

complete

GO:0004601

peroxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010255

F

Seeded from EcoCyc (v14.0)

complete

GO:0004601

peroxidase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.11.1.7

F

Seeded from EcoCyc (v14.0)

complete

GO:0004601

peroxidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0575

F

Seeded from EcoCyc (v14.0)

complete

GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006979

response to oxidative stress

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000763

P

Seeded from EcoCyc (v14.0)

complete

GO:0006979

response to oxidative stress

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002016

P

Seeded from EcoCyc (v14.0)

complete

GO:0006979

response to oxidative stress

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010255

P

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0020037

heme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000763

F

Seeded from EcoCyc (v14.0)

complete

GO:0020037

heme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002016

F

Seeded from EcoCyc (v14.0)

complete

GO:0020037

heme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010255

F

Seeded from EcoCyc (v14.0)

complete

GO:0042744

hydrogen peroxide catabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0376

P

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000763

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002016

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010255

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of hydroperoxidase I

could be indirect

Protein

fepE

PMID:16606699

Experiment(s):EBI-1147123

Protein

mhpR

PMID:16606699

Experiment(s):EBI-1147123

Protein

nadE

PMID:16606699

Experiment(s):EBI-1147123

Protein

ybiH

PMID:16606699

Experiment(s):EBI-1147123

Protein

malQ

PMID:19402753

MALDI(Z-score):20.994865

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSTSDDIHNT TATGKCPFHQ GGHDQSAGAG TTTRDWWPNQ LRVDLLNQHS NRSNPLGEDF
DYRKEFSKLD YYGLKKDLKA LLTESQPWWP ADWGSYAGLF IRMAWHGAGT YRSIDGRGGA
GRGQQRFAPL NSWPDNVSLD KARRLLWPIK QKYGQKISWA DLFILAGNVA LENSGFRTFG
FGAGREDVWE PDLDVNWGDE KAWLTHRHPE ALAKAPLGAT EMGLIYVNPE GPDHSGEPLS
AAAAIRATFG NMGMNDEETV ALIAGGHTLG KTHGAGPTSN VGPDPEAAPI EEQGLGWAST
YGSGVGADAI TSGLEVVWTQ TPTQWSNYFF ENLFKYEWVQ TRSPAGAIQF EAVDAPEIIP
DPFDPSKKRK PTMLVTDLTL RFDPEFEKIS RRFLNDPQAF NEAFARAWFK LTHRDMGPKS
RYIGPEVPKE DLIWQDPLPQ PIYNPTEQDI IDLKFAIADS GLSVSELVSV AWASASTFRG
GDKRGGANGA RLALMPQRDW DVNAAAVRAL PVLEKIQKES GKASLADIIV LAGVVGVEKA
ASAAGLSIHV PFAPGRVDAR QDQTDIEMFE LLEPIADGFR NYRARLDVST TESLLIDKAQ
QLTLTAPEMT ALVGGMRVLG ANFDGSKNGV FTDRVGVLSN DFFVNLLDMR YEWKATDESK
ELFEGRDRET GEVKFTASRA DLVFGSNSVL RAVAEVYASS DAHEKFVKDF VAAWVKVMNL
DRFDLL
Length

726

Mol. Wt

80.025 kDa

pI

5.0 (calculated)

Extinction coefficient

143,350 - 143,475 (calc based on 15 Y, 22 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

74..396

PF00141 Peroxidase

PMID:19920124

Domain

401..700

PF00141 Peroxidase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=katG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131780

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948431

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012901

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P13029

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10511

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10511

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948431

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000504

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0506

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

16.233+/-0.265

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.048394495

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

2814

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1908

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1550

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

katG

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4131838..4131878 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3942 (EcoliWiki Page)

NCBI GEO profiles for katG

microarray

GenExpDB:b3942 (EcoliWiki Page)

Summary of data for katG from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (4130988..4131444) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:D12[7]

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Notes

Accessions Related to katG Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10511

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0506

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3942

EcoGene

EcoGene:EG10511

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000504

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012901

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G35970 (score: 1.000; bootstrap: 100%)
  • AT4G35000 (score: 0.596)
  • AT3G09640 (score: 0.435)
  • AT1G07890 (score: 0.408)
  • AT4G08390 (score: 0.285)
  • AT1G77490 (score: 0.250)
  • AT4G32320 (score: 0.096)

From Inparanoid:20070104

Oryza gramene

  • Q8GZZ2 (score: 1.000; bootstrap: 100%)
  • Q84QS3 (score: 1.000; bootstrap: 100%)
  • P93404 (score: 1.000; bootstrap: 100%)
  • Q6ZJJ1 (score: 1.000; bootstrap: 100%)
  • O23983 (score: 0.930)
  • Q94IC3 (score: 0.924)
  • Q945R5 (score: 0.831)
  • Q9FE01 (score: 0.831)
  • Q41772 (score: 0.812)
  • Q7XWZ7 (score: 0.735)
  • Q6TY83 (score: 0.731)
  • Q5MJ31 (score: 0.629)
  • Q7FPQ5 (score: 0.509)
  • Q945R6 (score: 0.502)
  • Q7XJ01 (score: 0.353)
  • Q8GZC0 (score: 0.341)
  • Q5J331 (score: 0.337)
  • Q7XJ02 (score: 0.335)
  • Q8GZC1 (score: 0.325)
  • Q7XUS8 (score: 0.321)
  • Q69SV0 (score: 0.311)
  • Q8GZB9 (score: 0.287)
  • Q69JE6 (score: 0.235)
  • Q8LLM6 (score: 0.120)
  • Q5J330 (score: 0.108)
  • Q7F1J9 (score: 0.108)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKR066C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

KATG

From SHIGELLACYC

E. coli O157

KATG

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:48113

Superfamily (EcoliWiki Page)

SUPERFAMILY:48113

Pfam (EcoliWiki Page)

PF00141 Peroxidase

Pfam (EcoliWiki Page)

PF00141 Peroxidase

EcoCyc

EcoCyc:EG10511

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10511

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000504

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0506

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012901

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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