insD-6:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
insD-6 |
|---|---|
| Mnemonic | |
| Synonyms |
insD, ECK0358, b0361, JW0352, yi22-1, b1402, JW1397, yi22-2, b1996, JW1975, yi22-3, b2860, JW2826, yi22-4, b3045, JW3013, yi22-5, b4273, JW4230, yi22-6, unique to W3110, JW5933, JW5918, JW5903, JW5899, ECK1572, b1578, JW1570, insD-1, insD-2, insD-3, insD-4, insD-5[1][2][3] |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
8.21 minutes |
MG1655: 380898..381803 |
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NC_012759: 2797242..2798147 |
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NC_012759: 3825220..3825585 |
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NC_012967: 2005753..2006658 |
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NC_012759: 3825543..3826448 |
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NC_012759: 3432536..3433078 |
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NC_012759: 3432172..3432567 |
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NC_012759: 1358004..1358909 |
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NC_012759: 1959459..1960364 |
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NC_012759: 283657..284562 |
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NC_012759: 2881542..2882447 |
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NC_012759: 3071680..3072585 |
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NC_012759: 4435353..4436258 |
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W3110 |
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W3110: 380898..381803 |
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MG1655 |
31.6 minutes |
MG1655: 1466850..1465945 |
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W3110 |
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W3110: 1470540..1469635 |
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MG1655 |
44.55 minutes |
MG1655: 2067881..2066976 |
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W3110 |
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W3110: 2071994..2071089 |
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MG1655 |
64.54 minutes |
MG1655: 2995299..2994394 |
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W3110 |
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W3110: 2995933..2995028 |
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MG1655 |
68.64 minutes |
MG1655: 3184532..3185437 |
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W3110 |
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W3110: 3185166..3186071 |
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MG1655 |
96.92 minutes |
MG1655: 4496618..4497523 |
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W3110 |
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W3110: 4503275..4504180 |
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W3110 |
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W3110: 3743867..3742944 |
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W3110 |
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W3110: 2321728..2320805 |
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W3110 |
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W3110: 1301435..1302358 |
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W3110 |
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W3110: 1106556..1105633 |
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MG1655 |
35.54 minutes |
MG1655: 1648905..1649561 |
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W3110 |
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W3110: 1652595..1653251 |
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DH10B: 4598426..4599331 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
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Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 9% [7] | ||
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Linked marker |
est. P1 cotransduction: % [7] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
