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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	hcr
Gene Synonym(s)	ECK0863, b0872, JW5117, ybjV^[1], ybjV
Product Desc.	G6456^[2]^[3] Hydrid-cluster protein oxidoreductase; FAD and [2Fe-2S] cofactors, NADH as electron donor^[4]
Product Synonyms(s)	HCP oxidoreductase, NADH-dependent^[1], B0872^[2]^[1], YbjV^[2]^[1], Hcr^[2]^[1] , ECK0863, JW5117, ybjV, b0872
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): hcp-hcr^[2]
Regulation/Activity
Quick Links
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Notes

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Hcp is in an operon and associated with its substrate, the Hcp hybrid-cluster protein hydroxylamine reductase.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	hcr
Mnemonic	Hybrid-cluster protein reductase
Synonyms	ECK0863, b0872, JW5117, ybjV^[1], ybjV
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	19.62 minutes	MG1655: 911373..910405 <gbrowseImage> name=NC_000913:910405..911373 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 928857..927889 <gbrowseImage> name=NC_012967:927889..928857 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 813373..814341 <gbrowseImage> name=NC_012759:813373..814341 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 912572..911604 <gbrowseImage> name=NC_007779:911604..912572 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 965301..964333 <gbrowseImage> name=NC_010473:964333..965301 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
hcr(del) (Keio:JW5117)	deletion	deletion	PMID:16738554	Shigen CGSC11185^[5]
hcr-773(del)::kan			PMID:16738554	CGSC:101324
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW5117	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCACGATGCCAACGAATCAATG Primer 2:CCTGCGAGAACCAAATCCCCCTG
14H6	Kohara Phage	Genobase	PMID:3038334
zbh-29::Tn10	Linked marker	CAG18493 = CGSC7353^[5]	est. P1 cotransduction: % ^[6] Synonyms:zbi-29::Tn10
zca-1230::Tn10	Linked marker	CAG18478 = CGSC7356^[5]	est. P1 cotransduction: 23% ^[6] Synonyms:zbj-1230::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6456	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13691	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003056	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947660	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3455	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002960	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	Hcr
Synonyms	HCP oxidoreductase, NADH-dependent^[1], B0872^[2]^[1], YbjV^[2]^[1], Hcr^[2]^[1] , ECK0863, JW5117, ybjV, b0872
Product description	G6456^[2]^[3] Hydrid-cluster protein oxidoreductase; FAD and [2Fe-2S] cofactors, NADH as electron donor^[4]
EC number (for enzymes)	-1^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0005506	iron ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0408	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006810	transport	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0813	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009055	electron carrier activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000951	F	Seeded from EcoCyc (v14.0)	complete
	GO:0009055	electron carrier activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001041	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000951	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001433	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008333	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017927	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0560	F	Seeded from EcoCyc (v14.0)	complete
	GO:0022900	electron transport chain	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0249	P	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0479	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051536	iron-sulfur cluster binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001041	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051536	iron-sulfur cluster binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0411	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051537	2 iron, 2 sulfur cluster binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0001	F	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001433	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008333	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017927	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0560	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MTMPTNQCPW RMQVHHITQE TPDVWTISLI CHDYYPYRAG QYALVSVRNS AETLRAYTIS STPGVSEYIT LTVRRIDDGV GSQWLTRDVK RGDYLWLSDA MGEFTCDDKA EDKFLLLAAG CGVTPIMSMR RWLAKNRPQA DVRVIYNVRT PQDVIFADEW RNYPVTLVAE NNVTEGFIAG RLTRELLAGV PDLASRTVMT CGPAPYMDWV EQEVKALGVT RFFKEKFFTP VAEAATSGLK FTKLQPAREF YAPVGTTLLE ALESNNVPVV AACRAGVCGC CKTKVVSGEY TVSSTMTLTD AEIAEGYVLA CSCHPQGDLV LA
Length	322
Mol. Wt	35.738 kDa
pI	5.5 (calculated)
Extinction coefficient	57,870 - 59,245 (calc based on 13 Y, 7 W, and 11 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	11..106	PF00970 Oxidoreductase FAD-binding domain	PMID:19920124
Domain	242..316	PF00111 2Fe-2S iron-sulfur cluster binding domain	PMID:19920124
Domain	116..212	PF00175 Oxidoreductase NAD-binding domain	PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hcr taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128840	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947660	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002960	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P75824	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6456	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13691	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947660	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003056	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3455	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	18	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	16	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
hcp-hcr
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:911353..911393 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b0872 (EcoliWiki Page)	NCBI GEO profiles for hcr
microarray	GenExpDB:b0872 (EcoliWiki Page)	Summary of data for hcr from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to hcr Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6456	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3455	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b0872
EcoGene	EcoGene:EG13691	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003056	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002960	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000008218 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000021338 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT2G27510 (score: 1.000; bootstrap: 52%) AT1G10960 (score: 1.000; bootstrap: 52%) AT1G60950 (score: 0.866) AT5G10000 (score: 0.316) AT4G14890 (score: 0.094) AT1G32550 (score: 0.082)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000021956 (score: 1.000; bootstrap: 100%) ENSBTAP00000026548 (score: 0.594) ENSBTAP00000021485 (score: 0.525)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00020267 (score: 1.000; bootstrap: 54%) WBGene00020268 (score: 0.745)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000004410 (score: 1.000; bootstrap: 100%) ENSCAFP00000015233 (score: 0.063) ENSCAFP00000010109 (score: 0.055) ENSCAFP00000001359 (score: 0.051)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-030131-8497 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-235 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-3197 (score: 0.651) ZDB-GENE-030131-3281 (score: 0.651) ZDB-CDNA-050522-225 (score: 0.066) ZDB-GENE-050522-225 (score: 0.066)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0036211 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA10870-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000008475 (score: 1.000; bootstrap: 100%) ENSGALP00000022816 (score: 0.581) ENSGALP00000025496 (score: 0.092)	From Inparanoid:20070104
Homo sapiens	ENSP00000338461 (score: 1.000; bootstrap: 100%) ENSP00000290512 (score: 0.563) ENSP00000299498 (score: 0.519) ENSP00000265287 (score: 0.086)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000013336 (score: 1.000; bootstrap: 100%) ENSMMUP00000009243 (score: 0.571) ENSMMUP00000025974 (score: 0.528) ENSMMUP00000012531 (score: 0.085)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000001066 (score: 1.000; bootstrap: 100%) ENSMODP00000007465 (score: 0.588) ENSMODP00000023845 (score: 0.371) ENSMODP00000022903 (score: 0.077)	From Inparanoid:20070104
Oryza gramene	P11051 (score: 1.000; bootstrap: 100%) Q6ZJN6 (score: 1.000; bootstrap: 100%) Q40722 (score: 1.000; bootstrap: 100%) Q40684 (score: 0.924) O22382 (score: 0.895) Q8S3J5 (score: 0.840) P94044 (score: 0.824) Q75LK5 (score: 0.697) P27788 (score: 0.689) P00228 (score: 0.665) Q5N7C3 (score: 0.664) P27787 (score: 0.603) P27789 (score: 0.598) O80429 (score: 0.579) P83522 (score: 0.526) Q7XVG7 (score: 0.496) Q9AUK8 (score: 0.118) Q850T5 (score: 0.084) Q6JAD2 (score: 0.076)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000003119 (score: 1.000; bootstrap: 100%) ENSPTRP00000024911 (score: 0.635) ENSPTRP00000005800 (score: 0.589) ENSPTRP00000031416 (score: 0.088)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000005485 (score: 1.000; bootstrap: 100%) ENSRNOP00000012878 (score: 0.569) ENSRNOP00000026744 (score: 0.504) ENSRNOP00000039062 (score: 0.097)	From Inparanoid:20070104
Saccharomyces cerevisiae	YML125C (score: 1.000; bootstrap: 100%) YML087C (score: 0.425) YIL043C (score: 0.207) YKL150W (score: 0.138)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000174874 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00023783001 (score: 1.000; bootstrap: 100%) GSTENP00004448001 (score: 0.065)	From Inparanoid:20070104
Shigella flexneri	S0868	From SHIGELLACYC
E. coli O157	Z1106	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00175 Oxidoreductase NAD-binding domain
Pfam (EcoliWiki Page)	PF00111 2Fe-2S iron-sulfur cluster binding domain
Pfam (EcoliWiki Page)	PF00970 Oxidoreductase FAD-binding domain
Superfamily (EcoliWiki Page)	SUPERFAMILY:52343
Panther (EcoliWiki Page)	PTHR19370:SF35
Superfamily (EcoliWiki Page)	SUPERFAMILY:54292
Superfamily (EcoliWiki Page)	SUPERFAMILY:63380
EcoCyc	EcoCyc:G6456	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13691	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003056	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3455	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002960	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

hcr:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to hcr Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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