hcaE:On One Page
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;}
h2 .editsection { display:none;}</css>
<protect>
Standard Name |
hcaE |
---|---|
Gene Synonym(s) |
ECK2535, b2538, JW2522, hcaA1, digA, hcaA, phdC1, yfhU[1], yfhU |
Product Desc. |
3-phenylpropionate dioxygenase, α subunit[2][3]; Component of 3-phenylpropionate dioxygenase system[2][3]; 3-phenylpropionate dioxygenase system[2][3] 3-phenylpropionate/cinnamic acid dioxygenase, alpha subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4] |
Product Synonyms(s) |
3-phenylpropionate dioxygenase, large (alpha) subunit[1], B2538[2][1], DigA[2][1], YfhU[2][1], HcaA[2][1], HcaE[2][1], HcaA1[2][1], 3-phenylpropionate dioxygenase, large subunit[2][1] , digA, ECK2535, hcaA, hcaA1, JW2522, phdC1, yfhU, b2538 |
Function from GO |
<GO_nr /> |
Knock-Out Phenotype | |
Regulation/Expression | |
Regulation/Activity | |
Quick Links | |
edit table |
</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>
Notes
Hydrocinnamic acid is a synonym for 3-phenylpropionic acid. The N-terminal domains of YeaW and HcaE are homologous.[4]
Gene
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;}
h2 .editsection { display:none;}</css>
<protect>
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Standard name |
hcaE |
---|---|
Mnemonic |
Hydrocinnamic acid |
Synonyms |
ECK2535, b2538, JW2522, hcaA1, digA, hcaA, phdC1, yfhU[1], yfhU |
edit table |
</protect>
Notes
Location(s) and DNA Sequence
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
---|---|---|---|---|
MG1655 |
57.48 minutes |
MG1655: 2667054..2668415 |
||
NC_012967: 2589731..2591092 |
||||
NC_012759: 2552859..2554220 |
||||
W3110 |
|
W3110: 2667688..2669049 |
||
DH10B: 2758819..2760180 |
||||
edit table |
</protect>
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
---|---|---|---|---|---|
edit table |
<protect></protect>
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
---|---|---|---|---|---|---|---|
ΔhcaE (Keio:JW2522) |
deletion |
deletion |
PMID:16738554 |
||||
ΔhcaE783::kan |
PMID:16738554 |
| |||||
edit table |
<protect></protect>
Notes
Genetic Interactions
<protect>
Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
---|---|---|---|---|---|---|
edit table |
</protect>
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
Resource | Resource Type | Source | Notes/Reference |
---|---|---|---|
JW2522 |
Plasmid clone |
PMID:16769691 Status:Clone OK Primer 1:GCCACCACACCCTCAGATTTGAA Primer 2:CCTTTCATCACCTCCTGCTGGTA | |
Kohara Phage |
PMID:3038334 | ||
Kohara Phage |
PMID:3038334 | ||
Linked marker |
est. P1 cotransduction: 88% [6] | ||
Linked marker |
est. P1 cotransduction: 16% [6] | ||
edit table |
<protect></protect>
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:M009 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG13456 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120004468 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EchoBASE:EB3229 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0008355 |
Escherichia coli str. K-12 substr. MG1655 | |
edit table |
<protect></protect>
Notes
Links
Name | URL | Comments |
---|---|---|
edit table |
Product(s)
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;}
h2 .editsection { display:none;}</css>
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
HcaE |
---|---|
Synonyms |
3-phenylpropionate dioxygenase, large (alpha) subunit[1], B2538[2][1], DigA[2][1], YfhU[2][1], HcaA[2][1], HcaE[2][1], HcaA1[2][1], 3-phenylpropionate dioxygenase, large subunit[2][1] , digA, ECK2535, hcaA, hcaA1, JW2522, phdC1, yfhU, b2538 |
Product description |
3-phenylpropionate dioxygenase, α subunit[2][3]; Component of 3-phenylpropionate dioxygenase system[2][3]; 3-phenylpropionate dioxygenase system[2][3] 3-phenylpropionate/cinnamic acid dioxygenase, alpha subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4] |
EC number (for enzymes) | |
edit table |
<protect></protect>
Notes
Function
<protect>
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0005737 |
cytoplasm |
C |
Seeded from Riley et al 2006 [1]. |
Missing: evidence, reference | ||||
GO:0005506 |
iron ion binding |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_01648 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005506 |
iron ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR001663 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005506 |
iron ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015879 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005506 |
iron ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015881 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005506 |
iron ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020875 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005506 |
iron ion binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0408 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006725 |
cellular aromatic compound metabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR001663 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0008695 |
3-phenylpropionate dioxygenase activity |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_01648 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0008695 |
3-phenylpropionate dioxygenase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020875 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0008695 |
3-phenylpropionate dioxygenase activity |
GOA:spec |
IEA: Inferred from Electronic Annotation |
EC:1.14.12.19 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR017941 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0016491 |
oxidoreductase activity |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0560 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0016702 |
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0223 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015881 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0016708 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015879 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019439 |
aromatic compound catabolic process |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_01648 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019439 |
aromatic compound catabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015879 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019439 |
aromatic compound catabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020875 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019439 |
aromatic compound catabolic process |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0058 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0046872 |
metal ion binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0479 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0051536 |
iron-sulfur cluster binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0411 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR001663 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015879 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015881 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR017941 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0001 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR001663 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015879 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR015881 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR017941 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0055114 |
oxidation reduction |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0560 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
Subunits of 3-phenylpropionate dioxygenase system |
could be indirect |
||
Protein |
groL |
PMID:16606699 |
Experiment(s):EBI-1143192 | |
edit table |
</protect>
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
edit table |
<protect></protect>
Notes
Structure and Physical Properties
<protect>
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
---|---|
Sequence |
MTTPSDLNIY QLIDTQNGRV TPRIYTDPDI YQLELERIFG RCWLFLAHES QIPKPGDFFN TYMGEDAVVV VRQKDGSIKA FLNQCRHRAM RVSYADCGNT RAFTCPYHGW SYGINGELID VPLEPRAYPQ GLCKSHWGLN EVPCVESYKG LIFGNWDTSA PGLRDYLGDI AWYLDGMLDR REGGTEIVGG VQKWVINCNW KFPAEQFASD QYHALFSHAS AVQVLGAKDD GSDKRLGDGQ TARPVWETAK DALQFGQDGH GSGFFFTEKP DANVWVDGAV SSYYRETYAE AEQRLGEVRA LRLAGHNNIF PTLSWLNGTA TLRVWHPRGP DQVEVWAFCI TDKAASDEVK AAFENSATRA FGPAGFLEQD DSENWCEIQK LLKGHRARNS KLCLEMGLGQ EKRRDDGIPG ITNYIFSETA ARGMYQRWAD LLSSESWQEV LDKTAAYQQE VMK |
Length |
453 |
Mol. Wt |
51.109 kDa |
pI |
5.2 (calculated) |
Extinction coefficient |
109,320 - 110,570 (calc based on 18 Y, 15 W, and 10 C residues) |
edit table |
Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
edit table |
<protect></protect>
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
ASAP:ABE-0008355 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EcoCyc:M009 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG13456 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
RegulonDB:ECK120004468 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB3229 |
Escherichia coli str. K-12 substr. MG1655 | |
edit table |
<protect></protect>
Notes
Links
Name | URL | Comments |
---|---|---|
edit table |
Expression
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;}
h2 .editsection { display:none;}</css>
Overview
This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Cellular Levels
Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
---|---|---|---|---|---|---|---|
Protein |
E. coli K-12 MG1655 |
4a |
molecules/cell/generation |
|
Ribosome Profiling |
Low confidence in the sequencing data set. |
PMID: 24766808 |
Protein |
E. coli K-12 MG1655 |
10 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
4a |
molecules/cell/generation |
|
Ribosome Profiling |
Low confidence in the sequencing data set. |
PMID: 24766808 |
edit table |
Notes
Transcription and Transcriptional Regulation
<protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
|
![]() Figure courtesy of RegulonDB |
</protect>
Notes
This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_000913:2667034..2667074
source=MG1655
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
</protect>
Notes
This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Turnover and Regulation of Turnover
</protect>
Notes
This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.
Experimental
<protect>
Mutations Affecting Expression
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
Allele Name | Mutation | Phenotype | Reference |
---|---|---|---|
edit table |
Expression Studies
See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
Type | Reference | Notes |
---|---|---|
microarray |
NCBI GEO profiles for hcaE | |
microarray |
Summary of data for hcaE from multiple microarray studies | |
edit table |
Expression Resources
See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
Resource Name | Resource Type | Description | Source | Notes |
---|---|---|---|---|
edit table |
<protect></protect>
Notes
Accessions Related to hcaE Expression
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:M009 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB3229 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG13456 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120004468 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0008355 |
Escherichia coli str. K-12 substr. MG1655 | |
edit table |
<protect></protect>
Notes
Links
Name | URL | Comments |
---|---|---|
edit table |
Evolution
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;}
h2 .editsection { display:none;}</css>
Homologs in Other Organisms
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
Organism | Homologs (Statistics) | Comments |
---|---|---|
Xenopus tropicalis |
|
From Inparanoid:20070104 |
Shigella flexneri |
HCAA1 |
From SHIGELLACYC |
E. coli O157 |
HCAA1 |
From ECOO157CYC |
edit table |
Do-It-Yourself Web Tools
<protect></protect>
Notes
Families
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
PF00355 Rieske [2Fe-2S domain] |
||
EcoCyc:M009 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG13456 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120004468 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB3229 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0008355 |
Escherichia coli str. K-12 substr. MG1655 | |
edit table |
<protect></protect>
Notes
Links
Name | URL | Comments |
---|---|---|
edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
Categories