gabP:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name

gabP

Gene Synonym(s)

ECK2657, b2663, JW2638[1], JW2638

Product Desc.

GabP APC transporter[2][3]

GABA permease, membrane protein[4]

Product Synonyms(s)

gamma-aminobutyrate transporter[1], B2663[2][1], GabP[2][1] , ECK2657, JW2638, b2663

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gabDTP[2], csiD-ygaF-gabDTP[2], csiD

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]





Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gabP

Mnemonic

Gamma-AminoButyrate

Synonyms

ECK2657, b2663, JW2638[1], JW2638

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

60.18 minutes 

MG1655: 2792275..2793675
<gbrowseImage> name=NC_000913:2792275..2793675 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2689006..2690406
<gbrowseImage> name=NC_012967:2689006..2690406 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2678087..2679487
<gbrowseImage> name=NC_012759:2678087..2679487 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2792909..2794309
<gbrowseImage> name=NC_007779:2792909..2794309 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2884040..2885440
<gbrowseImage> name=NC_010473:2884040..2885440 source=DH10B preset=GeneLocation </gbrowseImage>

edit table

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table

<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔgabP (Keio:JW2638)

deletion

deletion

PMID:16738554

Shigen
CGSC10078[5]

ΔgabP744::kan

PMID:16738554

CGSC:101066


edit table

<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2638

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGGGCAATCATCGCAACCACA

Primer 2:CCGCGCGTATTATGAACGGGTGT

12G12

Kohara Phage

Genobase

PMID:3038334

10H9

Kohara Phage

Genobase

PMID:3038334

pheA18::Tn10

Linked marker

CAG12158 = CGSC7421[5]

est. P1 cotransduction: 7% [6]

srlD3131::Tn10

Linked marker

CAG18642 = CGSC7423[5]

est. P1 cotransduction: 26% [6]
Synonyms:zfh-3131::Tn10, zfi-3131::Tn10

edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11330

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11330

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001301

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948049

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1306

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008763

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GabP

Synonyms

gamma-aminobutyrate transporter[1], B2663[2][1], GabP[2][1] , ECK2657, JW2638, b2663

Product description

GabP APC transporter[2][3]

GABA permease, membrane protein[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004841

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006865

amino acid transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002293

P

Seeded from EcoCyc (v14.0)

complete

GO:0006865

amino acid transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004840

P

Seeded from EcoCyc (v14.0)

complete

GO:0006865

amino acid transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc (v14.0)

complete

GO:0015171

amino acid transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002293

F

Seeded from EcoCyc (v14.0)

complete

GO:0015185

L-gamma-aminobutyric acid transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011265

F

Seeded from EcoCyc (v14.0)

complete

GO:0015812

gamma-aminobutyric acid transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011265

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002293

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004841

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004840

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011265

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0055085

transmembrane transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002293

P

Seeded from EcoCyc (v14.0)

complete

GO:0055085

transmembrane transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004840

P

Seeded from EcoCyc (v14.0)

complete

GO:0055085

transmembrane transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004841

P

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071

IEP: Inferred from Expression Pattern

P

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 12 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]


edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGQSSQPHEL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM
IMRMLAEMAV ATPDTGSFST YADKAIGRWA GYTIGWLYWW FWVLVIPLEA NIAAMILHSW
VPGIPIWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIFLG AVAISGFYPY
AEVSGISRLW DSGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP EKHIVRATNS
VIWRISIFYL CSIFVVVALI PWNMPGLKAV GSYRSVLELL NIPHAKLIMD CVILLSVTSC
LNSALYTASR MLYSLSRRGD APAVMGKINR SKTPYVAVLL STGAAFLTVV VNYYAPAKVF
KFLIDSSGAI ALLVYLVIAV SQLRMRKILR AEGSEIRLRM WLYPWLTWLV IGFITFVLVV
MLFRPAQQLE VISTGLLAIG IICTVPIMAR WKKLVLWQKT PVHNTR
Length

466

Mol. Wt

51.081 kDa

pI

9.9 (calculated)

Extinction coefficient

111,840 - 112,465 (calc based on 16 Y, 16 W, and 5 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

18..458

PF00324 Amino acid permease

PMID:19920124

edit table

<motif_map/>

tmhmm.php?gene=gabP&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gabP taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130577

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948049

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008763

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P25527

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11330

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11330

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948049

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001301

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1306

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

2a

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

43

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

gabDTP

csiD-ygaF-gabDTP

edit table
Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_000913:2792255..2792295 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2663 (EcoliWiki Page)

NCBI GEO profiles for gabP

microarray

GenExpDB:b2663 (EcoliWiki Page)

Summary of data for gabP from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

<protect></protect>

Notes

Accessions Related to gabP Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11330

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1306

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2663

EcoGene

EcoGene:EG11330

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001301

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008763

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013870 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016244 (score: 0.231)
  • YP_026258 (score: 0.364)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020051 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000019910 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000021266 (score: 0.708)
  • ENSBTAP00000009736 (score: 0.672)
  • ENSBTAP00000023826 (score: 0.660)
  • ENSBTAP00000020054 (score: 0.651)
  • ENSBTAP00000020048 (score: 0.629)
  • ENSBTAP00000020050 (score: 0.613)
  • ENSBTAP00000004741 (score: 0.610)
  • ENSBTAP00000012324 (score: 0.593)
  • ENSBTAP00000015329 (score: 0.578)
  • ENSBTAP00000017752 (score: 0.568)
  • ENSBTAP00000019058 (score: 0.481)
  • ENSBTAP00000013304 (score: 0.471)
  • ENSBTAP00000019911 (score: 0.432)
  • ENSBTAP00000010274 (score: 0.417)
  • ENSBTAP00000004740 (score: 0.396)
  • ENSBTAP00000012086 (score: 0.363)
  • ENSBTAP00000031960 (score: 0.327)
  • ENSBTAP00000004738 (score: 0.324)
  • ENSBTAP00000019053 (score: 0.240)
  • ENSBTAP00000004742 (score: 0.216)
  • ENSBTAP00000033212 (score: 0.199)
  • ENSBTAP00000013958 (score: 0.112)
  • ENSBTAP00000007774 (score: 0.101)
  • YP_026258 (score: 0.320)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026258 (score: 0.354)
  • WBGene00029162 (score: 1.000; bootstrap: 89%)
  • WBGene00029182 (score: 1.000; bootstrap: 72%)
  • WBGene00038808 (score: 0.573)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022120 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009958 (score: 0.316)
  • ENSCAFP00000024875 (score: 0.315)
  • ENSCAFP00000010331 (score: 0.302)
  • ENSCAFP00000004025 (score: 0.286)
  • ENSCAFP00000021989 (score: 0.260)
  • ENSCAFP00000009940 (score: 0.239)
  • ENSCAFP00000018083 (score: 0.233)
  • ENSCAFP00000023985 (score: 0.175)
  • YP_026258 (score: 0.216)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015092 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000009114 (score: 0.481)
  • ENSCINP00000015061 (score: 0.376)
  • YP_026258 (score: 0.307)

From Inparanoid:20070104

Drosophila melanogaster

  • YP_026258 (score: 0.367)
  • FBgn0031064 (score: 1.000; bootstrap: 100%)
  • FBgn0037203 (score: 0.228)
  • FBgn0036764 (score: 0.225)
  • FBgn0036984 (score: 0.197)
  • FBgn0036493 (score: 0.193)

From Inparanoid:20070104

Drosophila pseudoobscura

  • YP_026258 (score: 0.366)
  • GA11681-PA (score: 1.000; bootstrap: 100%)
  • GA18954-PA (score: 0.224)
  • GA10777-PA (score: 0.221)
  • GA12151-PA (score: 0.196)
  • GA20214-PA (score: 0.157)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000015210 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000006942 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000022132 (score: 0.447)
  • ENSGALP00000027546 (score: 0.405)
  • ENSGALP00000009182 (score: 0.352)
  • YP_026258 (score: 0.316)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000231706 (score: 1.000; bootstrap: 100%)
  • ENSP00000298085 (score: 0.285)
  • ENSP00000004531 (score: 0.249)
  • ENSP00000340324 (score: 0.218)
  • ENSP00000215750 (score: 0.200)
  • YP_026258 (score: 0.220)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000018385 (score: 1.000; bootstrap: 78%)
  • YP_026258 (score: 0.220)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017922 (score: 1.000; bootstrap: 95%)
  • ENSMODP00000023784 (score: 0.295)
  • ENSMODP00000006229 (score: 0.289)
  • ENSMODP00000011481 (score: 0.267)
  • ENSMODP00000020049 (score: 0.217)
  • YP_026258 (score: 0.204)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000026872 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034277 (score: 0.262)
  • ENSPTRP00000009787 (score: 0.219)
  • ENSPTRP00000024285 (score: 0.199)
  • ENSPTRP00000037822 (score: 0.092)
  • YP_026258 (score: 0.220)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002560 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000001234 (score: 0.318)
  • ENSRNOP00000014809 (score: 0.301)
  • ENSRNOP00000005580 (score: 0.298)
  • ENSRNOP00000038036 (score: 0.296)
  • ENSRNOP00000035746 (score: 0.085)
  • YP_026258 (score: 0.353)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137252 (score: 1.000; bootstrap: 86%)
  • NEWSINFRUP00000169769 (score: 0.552)
  • NEWSINFRUP00000147106 (score: 0.495)
  • NEWSINFRUP00000168050 (score: 0.290)
  • YP_026258 (score: 0.360)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00012714001 (score: 1.000; bootstrap: 100%)
  • GSTENP00006821001 (score: 0.266)
  • GSTENP00003539001 (score: 0.263)
  • GSTENP00033801001 (score: 0.244)
  • GSTENP00035216001 (score: 0.241)
  • GSTENP00018927001 (score: 0.238)
  • GSTENP00008630001 (score: 0.236)
  • GSTENP00019046001 (score: 0.207)
  • GSTENP00007050001 (score: 0.173)
  • GSTENP00017133001 (score: 0.077)
  • YP_026258 (score: 0.231)

From Inparanoid:20070104

Shigella flexneri

GABP

From SHIGELLACYC

E. coli O157

GABP

From ECOO157CYC

edit table


Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00324 Amino acid permease

Panther (EcoliWiki Page)

PTHR11785:SF24

EcoCyc

EcoCyc:EG11330

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11330

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001301

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1306

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008763

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=gabP:On_One_Page&oldid=221056"