cydA:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
cydA |
|---|---|
| Mnemonic |
Cytochrome d |
| Synonyms |
ECK0721, b0733, JW0722, cyd-1[1] |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
16.61 minutes |
MG1655: 770681..772249 |
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NC_012967: 752340..753908 |
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NC_012759: 673441..675009 |
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W3110 |
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W3110: 771880..773448 |
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DH10B: 823273..824841 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
770681 |
Edman degradation |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
cydA::Tn5KAN-2 (FB20228) |
Insertion at nt 568 in Plus orientation |
does not contain pKD46 | |||||
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cydA85 |
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cydA2 |
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CydAB (del), cyoABCD (del), cbdAB (del), ygiN (del) |
deletion |
deletion |
respiration inhibitor |
deletion of all genes decreased oxygen uptake by 98% via activation of arcA, table 1. |
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CydAB(del), cyoABCD(del), cbdAB(del), ygiN(del) |
deletion |
deletion |
Growth Phenotype |
Mutaiton causes decreased growth rate via inhibition of arcA, table 1. |
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CydAB(del), cyoABCD(del), cbdAB(del), ygiN(del) |
deletion |
deletion |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0722 |
Plasmid clone |
Status:Clone OK Primer 1:GCCTTAGATATAGTCGAACTGTC Primer 2:CCGCGTGCCGGCTGAGTAGTCGT | |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 1% [9] | ||
|
Linked marker |
est. P1 cotransduction: 74% [9] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Bader, M et al. (1999) Oxidative protein folding is driven by the electron transport system. Cell 98 217-27 PubMed
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ Strauss, B et al. (2004) Cell death in Escherichia coli dnaE(Ts) mutants incubated at a nonpermissive temperature is prevented by mutation in the cydA gene. J. Bacteriol. 186 2147-55 PubMed
- ↑ 5.0 5.1 5.2 Portnoy, VA et al. (2010) Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655. Appl. Environ. Microbiol. 76 6529-40 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 8.0 8.1 CGSC: The Coli Genetics Stock Center
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
