atoC:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

atoC

Mnemonic

Acetoacetate

Synonyms

ECK2213, b2220, JW2214, Az[1], Az

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Notes

Location(s) and DNA Sequence

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Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50 minutes 

MG1655: 2319888..2321273
<gbrowseImage> name=NC_000913:2319888..2321273 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2268566..2269951
<gbrowseImage> name=NC_012967:2268566..2269951 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2205693..2207078
<gbrowseImage> name=NC_012759:2205693..2207078 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2326536..2327921
<gbrowseImage> name=NC_007779:2326536..2327921 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2410876..2412261
<gbrowseImage> name=NC_010473:2410876..2412261 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

atoC(del) (Keio:JW2214)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC9785[3]

atoC12

PMID:353047[4]

CGSC:7257

atoC200(Const)

constitutive

CGSC:7482

atoC512(Const)

constitutive

CGSC:16174

atoC531

CGSC:17103

atoC561

CGSC:17105

atoC774(del)::kan

PMID:16738554[2]

CGSC:100126


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2214

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCACTGCTATTAATCGCATCCT

Primer 2:CCTACATCCGCCGGATCGATACC

5A1

Kohara Phage

Genobase

PMID:3038334[6]

4F12

Kohara Phage

Genobase

PMID:3038334[6]

atoS298::Tn10

Linked marker

CAG12177 gyrA+ = CGSC7525[3]

est. P1 cotransduction: 100% [7]
Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

zfa-723::Tn10

Linked marker

CAG12178 gyrA+ = CGSC7526[3]

est. P1 cotransduction: 42% [7]
Synonyms:zei-723::Tn10, zfa-723::Tn10 nnnThe original CAG12178 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

mutants

Strain

PMID:2883171[8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11668

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11668

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001611

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947444

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1619

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007343

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. Pluschke, G et al. (1978) Function of phospholipids in Escherichia coli. Characterization of a mutant deficient in cardiolipin synthesis. J. Biol. Chem. 253 5048-55 PubMed
  5. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. 6.0 6.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  7. 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. Jenkins, LS & Nunn, WD (1987) Regulation of the ato operon by the atoC gene in Escherichia coli. J. Bacteriol. 169 2096-102 PubMed

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