atoB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

atoB

Gene Synonym(s)

ECK2217, b2224, JW2218[1], JW2218

Product Desc.

AtoB[2][3];

Component of acetyl-CoA acetyltransferase[2][3]

Acetyl-CoA acetyltransferase[4]

Product Synonyms(s)

acetyl-CoA acetyltransferase[1], B2224[2][1], AtoB[2][1] , ECK2217, JW2218, b2224

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): atoDAEB[2], OP00154, atoDAB

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

atoB

Mnemonic

Acetoacetate

Synonyms

ECK2217, b2224, JW2218[1], JW2218

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50.09 minutes, 50.09 minutes 

MG1655: 2324131..2325315
<gbrowseImage> name=NC_000913:2324131..2325315 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2272809..2273993
<gbrowseImage> name=NC_012967:2272809..2273993 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2209936..2211120
<gbrowseImage> name=NC_012759:2209936..2211120 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2330779..2331963
<gbrowseImage> name=NC_007779:2330779..2331963 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2415119..2416303
<gbrowseImage> name=NC_010473:2415119..2416303 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔatoB (Keio:JW2218)

deletion

deletion

PMID:16738554

Shigen
CGSC9789[5]

ΔatoB778::kan

PMID:16738554

CGSC:100124


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2218

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAAATTGTGTCATCGTCAG

Primer 2:CCATTCAACCGTTCAATCACCAT

5A1

Kohara Phage

Genobase

PMID:3038334

4F12

Kohara Phage

Genobase

PMID:3038334

E13A5

Kohara Phage

Genobase

PMID:3038334

atoS298::Tn10

Linked marker

CAG12177 gyrA+ = CGSC7525[5]

est. P1 cotransduction: 87% [6]
Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

zfa-723::Tn10

Linked marker

CAG12178 gyrA+ = CGSC7526[5]

est. P1 cotransduction: 50% [6]
Synonyms:zei-723::Tn10, zfa-723::Tn10 nnnThe original CAG12178 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11672

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11672

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001615

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946727

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1623

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007355

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtoB

Synonyms

acetyl-CoA acetyltransferase[1], B2224[2][1], AtoB[2][1] , ECK2217, JW2218, b2224

Product description

AtoB[2][3];

Component of acetyl-CoA acetyltransferase[2][3]

Acetyl-CoA acetyltransferase[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016038

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016039

F

Seeded from EcoCyc (v14.0)

complete

GO:0003985

acetyl-CoA C-acetyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.3.1.9

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006629

lipid metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0443

P

Seeded from EcoCyc (v14.0)

complete

GO:0006631

fatty acid metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0276

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002155

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016038

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016039

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020610

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020613

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020615

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020616

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020617

P

Seeded from EcoCyc (v14.0)

complete

GO:0008415

acyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0012

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002155

F

Seeded from EcoCyc (v14.0)

complete

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020610

F

Seeded from EcoCyc (v14.0)

complete

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020613

F

Seeded from EcoCyc (v14.0)

complete

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020615

F

Seeded from EcoCyc (v14.0)

complete

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020616

F

Seeded from EcoCyc (v14.0)

complete

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020617

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of acetyl-CoA acetyltransferase

could be indirect

Protein

aceB

PMID:16606699

Experiment(s):EBI-1142224

Protein

glpA

PMID:16606699

Experiment(s):EBI-1142224
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKNCVIVSAV RTAIGSFNGS LASTSAIDLG ATVIKAAIER AKIDSQHVDE VIMGNVLQAG
LGQNPARQAL LKSGLAETVC GFTVNKVCGS GLKSVALAAQ AIQAGQAQSI VAGGMENMSL
APYLLDAKAR SGYRLGDGQV YDVILRDGLM CATHGYHMGI TAENVAKEYG ITREMQDELA
LHSQRKAAAA IESGAFTAEI VPVNVVTRKK TFVFSQDEFP KANSTAEALG ALRPAFDKAG
TVTAGNASGI NDGAAALVIM EESAALAAGL TPLARIKSYA SGGVPPALMG MGPVPATQKA
LQLAGLQLAD IDLIEANEAF AAQFLAVGKN LGFDSEKVNV NGGAIALGHP IGASGARILV
TLLHAMQARD KTLGLATLCI GGGQGIAMVI ERLN
Length

394

Mol. Wt

40.352 kDa

pI

7.1 (calculated)

Extinction coefficient

8,940 - 9,565 (calc based on 6 Y, 0 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..263

PF00108 Thiolase, N-terminal domain

PMID:19920124

Domain

270..392

PF02803 Thiolase, C-terminal domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atoB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130161

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946727

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007355

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76461

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11672

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11672

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946727

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001615

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1623

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

2a

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

3a

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

atoDAEB

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2324111..2324151 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2224 (EcoliWiki Page)

NCBI GEO profiles for atoB

microarray

GenExpDB:b2224 (EcoliWiki Page)

Summary of data for atoB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to atoB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11672

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1623

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2224

EcoGene

EcoGene:EG11672

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001615

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007355

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020372 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025799 (score: 1.000; bootstrap: 48%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G47720 (score: 1.000; bootstrap: 95%)
  • AT5G48230 (score: 0.666)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003660 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000012548 (score: 0.634)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042428 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009952 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001037 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019425 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-990714-22 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-5 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-051120-30 (score: 0.158)
  • ZDB-GENE-051120-66 (score: 0.158)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231621 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035203 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21576-PA (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019037 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000239584 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016873 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008873 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Mus musculus

  • MGI:87871 (score: 1.000; bootstrap: 99%)
  • MGI:109182 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6K3Z3 (score: 1.000; bootstrap: 93%)
  • Q9ASK5 (score: 0.679)
  • Q9XHH0 (score: 0.111)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000032016 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018934 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000048489 (score: 0.628)
  • ENSRNOP00000041632 (score: 0.422)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL028W (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2159c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000180335 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023110001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53901

Superfamily (EcoliWiki Page)

SUPERFAMILY:53901

Panther (EcoliWiki Page)

PTHR18919:SF42

Pfam (EcoliWiki Page)

PF00108 Thiolase, N-terminal domain

Pfam (EcoliWiki Page)

PF02803 Thiolase, C-terminal domain

EcoCyc

EcoCyc:EG11672

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11672

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001615

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1623

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007355

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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