Plasmid F ycbB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

Plasmid F ycbB

Gene Synonym(s)

ycbB, Fpla028

Product Desc.

ycbB

similar to Adhesin AidA-I precursors, ice nucleaation proteins, surface proteins, and outer membrane proteins; similar to ychA

Product Synonyms(s)

ycbB, Fpla028

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Plasmid F ycbB

Mnemonic
Synonyms

ycbB, Fpla028

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_002483

NC_002483: 26817..21541
<gbrowseImage> name=NC_002483:21541..26817 source=plasmid_F preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ycbB

Synonyms

ycbB, Fpla028

Product description

ycbB

similar to Adhesin AidA-I precursors, ice nucleaation proteins, surface proteins, and outer membrane proteins; similar to ychA

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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</protect>


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MCFFLGSRLA YAENIDGSST ISNRDISGSL NIGINKDANI DINGTVNIKD YFSVATCNGQ
SSTCPEGGLN ASAKIDKSAS VGASVTIVGD SSKGELNIDG GSTLYTQQLW VSGNDNDKTS
NVSDDSNGSL SINNGSNVFV VSSQDDTPFK TNSVKWNQNI ISQGNNITDG TVSSGDLVLG
KTGNGIIDID NNSKLDVKND VVVSTGVDGI PNEKPSEINI KNESNFSVHG DMKGGISAAG
KLNLNMDNSS NLHVDKNIAV GIGRESNITV SASRESSIFS DGNFTVATGN NSNANLKLDA
SNLSVNGVST IGSGDGSITK FDIKNGSVVT SSSDMTLAKG KGTQANINIS SSELNTGSLS
VGEGDNADVK MTGSGASVSS KKTFTVAKGN NASATLNYTG SKIDIGSGYI GEGESAKTQL
ELNNSALTAS GKVFIGQGNT TQTNLTLNDK SSVNVSGEMS VAQGSSASVD VTATNAVLSA
DSLSLGGGEA AKVTMTGSGA TVSSKNTFTV AKGNNASATL DYTDSKIDIG SGYIGEGEAA
KTQLELNNSA LTASGKVFIG QGNTTQTNLT LNDKSSVNVS DEMSVAQGSS ASVDVTITNA
VLSADSLSLG GGEAAKVTMT GNRATISSGN TFTVAKGNNA SATLDYSDSK INIGNGYIGG
GEKAQTVLTL KDSALAATGD VIMGQGQETQ TDLTLSPQSS IKVSGNMSIA QGNAASAKVI
VDNADLSANS MSIGEGDTAA VTMTGNGATI SSGNTFTVAR GNNASATLDY SDSKINIGNG
YIGGGEKAQT VLTLKDSALA ATGDVIMGQG QETQTDLTLS PQSSIKVSGN MSIAQGNAAS
AKVIVDNADL SANSMSIGEG DTAAVTMTGN GATISSGNTF TVARGNNASA TLDYSDSKIN
IGNGYIGVGE KSHTLLKLDN STFHAAGNID IGKGSSTIAN VSVGAGSNMS IKGNASIGVG
DQAKAKFSVK DSVLNIGSSL VLGQGNSTEA EMSVEHSQLY SGGLLLGTAN NAVVSMSANN
SEISVVGDYT VAKGDGSEAT LIYKNSDINL GNGILGAGSG VKTDLSLDNS KFVASDGIII
GKGDNAITNL SISDHSVFKG ERINIGNGSY SKNSISITGN SIFDFGSSQE STIGEGDYSQ
SLVTINDASV YGDGSLTLAK GNNSFAVLNL QDNAVTNANN ISLATGLGSK AIVNVSNMNS
GQFNPVSMGA GDGYAEVNFD GVNGYTLSTN FICMDSGSCA DTVINVNRGT VSLSGTNDWK
GQINVYDGTR LDARGNDAVD GILNVSKEAQ VDFNGYSQHM TGIDNKGMIY LSDGSASSDV
YLDKDYVAHD GSGVQFGIFG QKEADVMHVK GDTSGSSGIV VTTNSKNKIK KGGDILLVEV
NGDSSGSFYL NSLIKNGKEY KVTGDYIDVG AWEYALNKKR KNWYLSVDMR PEPGAFINNS
KSMLDMFALQ RYDIPGQHRY PTLFENLYNN GMWIQFNNNS GSNSEVYDNL KTSYSLNTMM
IGGDIYNWTD GYNYSHIGIM GGMGSAANKT TSTNNKRATG NVDGYTLGLY HVFQQNISDG
LNESERQGLW TYSSIQYMDY DNSVSSTNNF KANYGVNGFR LTGEVGYLKN IGGIQPSDFY
VEPKLYLSHT ELSGGVVEDL QGGKITYPNS LTIIEPGVFF SYRKTHESTS NDEAMFKDYI
KQSVVDAWFG GGYSFKTGNY SRTNFDSDMV EYNTSDNFAL KSGVEFEFLK DARLLLTSSY
SINNDRNLSF ILGGNYYF
Length

1,758

Mol. Wt

182.634 kDa

pI

4.5 (calculated)

Extinction coefficient

134,430 - 135,055 (calc based on 57 Y, 9 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Plasmid_F_ycbB taxon=2465 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki. </protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_002483:26797..26837 source=plasmid_F flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Plasmid F ycbB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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Categories

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