Phage f1 I:On One Page
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
References | Suggestions |
<protect>
Standard Name |
I |
---|---|
Gene Synonym(s) |
XI |
Product Desc. |
I: assembly protein [1], inner membrane protein [2]
|
Product Synonyms(s) | |
Function from GO |
<GO_nr /> |
Knock-Out Phenotype | |
Regulation/Expression | |
Regulation/Activity | |
Quick Links | |
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Notes
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Yu, JS et al. (2007) In-frame overlapping genes: the challenges for regulating gene expression. Mol. Microbiol. 63 1158-72 PubMed
- ↑ 2.0 2.1 2.2 2.3 UniProt Accession P03657: http://www.uniprot.org/uniprot/P03657
- ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
- ↑ NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
- ↑ Rapoza, MP & Webster, RE (1995) The products of gene I and the overlapping in-frame gene XI are required for filamentous phage assembly. J. Mol. Biol. 248 627-38 PubMed
Gene
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Standard name |
I |
---|---|
Mnemonic | |
Synonyms |
XI |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
---|---|---|---|---|
J02448: 3196..4242 |
||||
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
---|---|---|---|---|---|---|---|
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Notes
Genetic Interactions
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Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
---|---|---|---|---|---|---|
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Notes
Genetic Resources
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See Help:Gene_resources for help entering information into the Genetic Resources table.
Resource | Resource Type | Source | Notes/Reference |
---|---|---|---|
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
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Notes
Links
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Name | URL | Comments |
---|---|---|
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Product(s)
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
I, XI |
---|---|
Synonyms | |
Product description |
I: assembly protein [5], inner membrane protein [3]
|
EC number (for enzymes) |
|
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Notes
Function
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Gene Ontology
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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0042963 |
phage assembly |
PMID:7752229 |
IMP: Inferred from Mutant Phenotype |
P |
complete | |||
GO:0016021 |
integral to membrane |
PMID:2457024 |
IDA: Inferred from Direct Assay |
C |
complete | |||
GO:0005887 |
integral to plasma membrane |
PMID:1556066 |
IDA: Inferred from Direct Assay |
C |
I and XI |
complete | ||
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
Cytoplasmic domain of G1P, interacts at adhesion zone |
PMID:3881414 PMID:2746731 |
IMP; see PMID:3881414 Table 3. Mutants with no host trxA failed to grow. PMID:2746731 discusses interaction of thioredoxin and G1P. | |
DNA |
Packing signal (PS) on phage DNA |
Recognises PS to encapsidate phage DNA |
PMID:2746731 |
IMP; Gene mutations promoted assembly of ss plasmid DNAs that lacked a PS into filamentous transducing particles, suggesting that the wild-type proteins may normally interact with the PS. |
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Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
---|---|
Sequence |
MAVYFVTGKL GSGKTLVSVG KIQDKIVAGC KIATNLDLRL QNLPQVGRFA KTPRVLRIPD KPSISDLLAI GRGNDSYDEN KNGLLVLDEC GTWFNTRSWN DKERQPIIDW FLHARKLGWD IIFLVQDLSI VDKQARSALA ENVVYCRRLD RITLPFVGTL YSLITGSKMP LPKLHVGVVK YGDSQLSPTV ERWLYTGKNL YNAYDTKQAF SSNYDSGVYS YLTPYLSHGR YFKPLNLGQK MKLTKIYLKK FSRVLCLAIG FASAFTYSYI TQPKPEVKKV VSQTYDFDKF TIDSSQRLNL SYRYVFKDSK GKLINSDDLQ KQGYSLTYID LCTVSIKKGN SNEIVKCN |
Length |
348 |
Mol. Wt |
39.529 kDa |
pI |
9.9 (calculated) |
Extinction coefficient |
58,790 - 59,540 (calc based on 21 Y, 5 W, and 6 C residues) |
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</protect>
Domains/Motifs/Modification Sites
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
</protect> |
<motif_map/> |
Structure <protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
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Structure figures<protect> | ||||||
Notes
See PMID: 10547282 for info on charges of residues in alpha helix and importance to functioning of pI but not to pXI.
Gene Product Resources
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
edit table |
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Notes
Links
<protect>
Name | URL | Comments |
---|---|---|
edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
- ↑ NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
- ↑ 3.0 3.1 3.2 3.3 UniProt Accession P03657: http://www.uniprot.org/uniprot/P03657
- ↑ Rapoza, MP & Webster, RE (1995) The products of gene I and the overlapping in-frame gene XI are required for filamentous phage assembly. J. Mol. Biol. 248 627-38 PubMed
- ↑ Yu, JS et al. (2007) In-frame overlapping genes: the challenges for regulating gene expression. Mol. Microbiol. 63 1158-72 PubMed
Categories
Expression
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Overview | Transcription | Translation | Turnover | Experimental | Links | References | Suggestions |
Overview
Intracellular Levels
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See Help:Cellular levels
Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
---|---|---|---|---|---|---|---|
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Notes
Transcription and Transcriptional Regulation
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<protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
</protect>
Notes
Translation and Regulation of Translation
<gbrowseImage>
name=J02448:3176..3216
source=bacteriophage_f1
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
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Notes
Turnover and Regulation of Turnover
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Notes
Experimental
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Mutations Affecting Expression
<protect>
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
Allele Name | Mutation | Phenotype | Reference |
---|---|---|---|
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</protect>
Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
Type | Reference | Notes |
---|---|---|
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</protect>
Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
Resource Name | Resource Type | Description | Source | Notes |
---|---|---|---|---|
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Notes
Accessions Related to Phage_f1_I Expression
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
edit table |
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Notes
Links
<protect>
Name | URL | Comments |
---|---|---|
edit table |
</protect>
References
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Categories
Evolution
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Homologs | Families | Links | References | Suggestions |
Homologs in Other Organisms
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Organism | Homologs (Statistics) | Comments |
---|---|---|
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Do-It-Yourself Web Tools
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Notes
Families
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Database | Accession | Notes |
---|---|---|
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Notes
Links
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Name | URL | Comments |
---|---|---|
edit table |
</protect>
References
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Categories