Phage P1 sit:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
<protect>
| Standard Name |
sit |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
putative structural injection transglycosylase; putative tail ruler; product 99 pct identical to predicted product of orf47 of P1 PID:g2661100; region of aa 467..882 similar to region of aa 1141..1545 of putative transglycosylase of B. subtilis bacteriophage SPBc2 PID:g2634555 and bacterial lytic transglycosylases; |
| Product Synonyms(s) |
gp037 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
</protect> <protect></protect>
Notes
References
See Help:References for how to manage references in EcoliWiki.
Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
<protect>
Nomenclature
<protect>
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
sit |
|---|---|
| Mnemonic | |
| Synonyms |
|
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</protect> </protect>
Notes
Location(s) and DNA Sequence
<protect>
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_005856: 34144..51254 |
||||
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Genetic Resources
<protect>
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
Sit |
|---|---|
| Synonyms |
gp037 |
| Product description |
putative structural injection transglycosylase; putative tail ruler; product 99 pct identical to predicted product of orf47 of P1 PID:g2661100; region of aa 467..882 similar to region of aa 1141..1545 of putative transglycosylase of B. subtilis bacteriophage SPBc2 PID:g2634555 and bacterial lytic transglycosylases; |
| EC number (for enzymes) |
|
| edit table |
</protect> <protect></protect>
Notes
Function
<protect>
Gene Ontology
<protect>
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
|
GO:0098015 |
virus tail |
PMID:15489417 |
IDA: Inferred from Direct Assay |
C |
7057-7058 |
complete | ||
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</protect>
Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
</protect> </protect>
Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
<protect>
Physical Properties
<protect>
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MERKNANIDD VIRTVETASA KELEELAGIR EAVEDLKGGR VATVYPVSRS VSALNRTIEN SRPDFVANAP SVDPIVEAMK RLNLGDVSRV VQEDVAQQEQ RAKSTTPKGK KRRRKAIPED VKAQRTEAAE HAREMFGQKG GAQKSQNQRD ARGRFIGKSG SKAAAEDARA ERAEKARRKE DDERLNAESG LLKKLSKVAE GIGNPSETRA VDALGYAVAG PLWAAGKELG GISKEVGGSL NGARKSIADV IRGNDDNSRR KGFFRRKSQN SADVVQVNTQ KRTVQELQEQ TSEIKEGNDK ILSALDQIAK NTGKKKGGLL SKLFSLLGKG AGGVASLLMG RGMLKKAGAL AFGALGAKKL VGMLRGGGKK TLAHEGGDLV ARAAGKLGLK AVGKGALRAI PLVGTVAGGI YDAVTGWNDT EAQRRAFGLK SGQDPSFQQK SAYTLANILD MGGLVSGISS AIGEVLKSLG FEDIGNMLQS FSTESIAQAI DSGITNLETY ISNLGDTIST KFDDYTAKIG DAVSAWFSDT SNKLLEKLDA IKDFFTVDNL KQVFSDAIDS AIDFIQNPGK HIKEAAGNIW DGVKNLPGKA LDAAVDAVKN TPAAMIVSKI PNPIGEANAK EITPELKAPV NSHQETSDSK TESDAKQSNI ATRVINAALD TAKDSNKTVK QTANQIINAN AVETGNSALQ KIDKAIGQNS LSSSSLNTTG TRNDIQKAAD TYNNGNLDVK VGSLGAEGKA NLDKLAPYFA ELENKYGLPE GTLYAIAATE SGGNPNAKST LTRSPNGKLS GGALGMFQFT SVAREETGLS REDSFNPEKS AEAAALLMSK YLKQANGDLN EAITAYNAGF GTINKWKKGT GDLSKENREY AIKVNTHRAR YLGGEIYTPG AGAQGGAQYG VRGPLPDNAV IDQSTGLAFT PGDSPFEKGG LVDKIGNAVG VNDLVNKFMN GRGMRREVVQ GTLEERARGK GTATAAGNVY VDTPMPAEEA RPVANNSSYF DQLGAQMGID GLYDKLINAR GMRSNNSPQP ASTSQVTTAA NDLQQPTGRM QIDGQVISDL GGSGAKPTMQ LADNTVSLDG ETKRLFAQMT SLLARIEEHT KDSAKGQGTV VKVSTPQPGV MRTVPLSIDD PLMNDYARVD |
| Length |
1,140 |
| Mol. Wt |
120.743 kDa |
| pI |
9.5 (calculated) |
| Extinction coefficient |
57,300 (calc based on 20 Y, 5 W, and 0 C residues) |
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</protect>
Domains/Motifs/Modification Sites
|
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
</protect> |
<motif_map/> |
|
Structure
</protect> | </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
<protect>
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Expression
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Overview | Transcription | Translation | Turnover | Experimental | Links | References | Suggestions |
Overview
Cellular Levels
<protect>
See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Transcription and Transcriptional Regulation
<protect>
| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
</protect>
Notes
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_005856:44390..44430
source=bacteriophage_P1
flip=1
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
</protect>
Notes
Turnover and Regulation of Turnover
</protect>
Notes
Experimental
<protect>
Mutations Affecting Expression
<protect>
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
</protect>
Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
</protect>
Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions Related to Phage_P1_sit Expression
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Evolution
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Homologs | Families | Links | References | Suggestions |
Homologs in Other Organisms
<protect>
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
</protect>
Do-It-Yourself Web Tools
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Notes
Families
<protect>
See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
