Phage P1 pacB:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

<protect>

Standard Name

pacB

Gene Synonym(s)
Product Desc.

DNA pacase B subunit; cuts phage DNA at pac site together with PacA; 100 pct identical to previously predicted pacB product of P1 Swissprot: PACB_BPP1;

Product Synonyms(s)

gp110

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> <protect></protect>

Notes

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

<protect>

Nomenclature

[back to top]


<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pacB

Mnemonic
Synonyms


edit table

</protect> </protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_005856: 88754..96174
<gbrowseImage> name=NC_005856:88754..96174 source=bacteriophage_P1 preset=GeneLocation </gbrowseImage>

edit table

</protect> </protect>

Notes

Sequence Features

[back to top]


<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table

</protect> <protect></protect>

Notes

Alleles and Phenotypes

[back to top]


<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table

</protect> <protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

</protect> <protect></protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PacB

Synonyms

gp110

Product description

DNA pacase B subunit; cuts phage DNA at pac site together with PacA; 100 pct identical to previously predicted pacB product of P1 Swissprot: PACB_BPP1;

EC number (for enzymes)


edit table

</protect> <protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0019073

viral DNA genome packaging

PMID:1538406

IMP: Inferred from Mutant Phenotype

P

Figure 4, text on 986-987.

complete

edit table

</protect>

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect> </protect>

Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

</protect> <protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MARSCVTDPR WRELVALYRY DWIAAADVLF GKTPTWQQDE IIESTQQDGS WTSVTSGHGT
GKSDMTSIIA ILFIMFFPGA RVILVANKRQ QVLDGIFKYI KSNWATAVSR FPWLSKYFIL
TETSFFEVTG KGVWTILIKS CRPGNEEALA GEHADHLLYI IDEASGVSDK AFSVITGALT
GKDNRILLLS QPTRPSGYFY DSHHRLAIRP GNPDGLFTAI ILNSEESPLV DAKFIRAKLA
EYGGRDNPMY MIKVRGEFPK SQDGFLLGRD EVERATRRKV KIAKGWGWVA CVDVAGGTGR
DKSVINIMMV SGQRNKRRVI NYRMLEYTDV TETQLAAKIF AECNPERFPN ITIAIDGDGL
GKSTADLMYE RYGITVQRIR WGKKMHSRED KSLYFDMRAF ANIQAAEAVK SGRMRLDKGA
ATIEEASKIP VGINSAGQWK VMSKEDMKKK LNLHSPDHWD TYCFAMLANY VPQDEVLSVE
DEAQVDEALA WLNE
Length

494

Mol. Wt

55.605 kDa

pI

8.2 (calculated)

Extinction coefficient

95,340 - 95,965 (calc based on 16 Y, 13 W, and 5 C residues)

edit table

</protect>

Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

68 - 85

Predicted membrane-spanning helix.

TMD predicted by TMHMM[1]


edit table

</protect>

<motif_map/>

tmhmm.php?gene=Phage_P1_pacB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_P1_pacB taxon=10678 </beststructure>

Models

View models at:

edit table

</protect>

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

</protect> <protect></protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>


References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

[back to top]


Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels

[back to top]


<protect> See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
edit table

</protect>

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
edit table

</protect>

</protect>

Notes

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_005856:91702..91742 source=bacteriophage_P1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental

[back to top]


<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table

</protect>

Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
edit table

</protect>

Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

</protect> <protect></protect>

Notes

Accessions Related to Phage_P1_pacB Expression

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
edit table

</protect>

Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_P1_pacB:On_One_Page&oldid=844441"