Phage P1 pacB:Gene Product(s)

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Gene

Gene Product(s)

Expression

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Nomenclature

Function

Interactions

Localization

Sequence

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Structure

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Nomenclature

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Standard name	PacB
Synonyms	gp110
Product description	DNA pacase B subunit; cuts phage DNA at pac site together with PacA; 100 pct identical to previously predicted pacB product of P1 Swissprot: PACB_BPP1;
EC number (for enzymes)
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Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0019073	viral DNA genome packaging	PMID:1538406	IMP: Inferred from Mutant Phenotype		P	Figure 4, text on 986-987.	complete
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Interactions

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Partner Type	Partner	Notes	References	Evidence
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Localization

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Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MARSCVTDPR WRELVALYRY DWIAAADVLF GKTPTWQQDE IIESTQQDGS WTSVTSGHGT GKSDMTSIIA ILFIMFFPGA RVILVANKRQ QVLDGIFKYI KSNWATAVSR FPWLSKYFIL TETSFFEVTG KGVWTILIKS CRPGNEEALA GEHADHLLYI IDEASGVSDK AFSVITGALT GKDNRILLLS QPTRPSGYFY DSHHRLAIRP GNPDGLFTAI ILNSEESPLV DAKFIRAKLA EYGGRDNPMY MIKVRGEFPK SQDGFLLGRD EVERATRRKV KIAKGWGWVA CVDVAGGTGR DKSVINIMMV SGQRNKRRVI NYRMLEYTDV TETQLAAKIF AECNPERFPN ITIAIDGDGL GKSTADLMYE RYGITVQRIR WGKKMHSRED KSLYFDMRAF ANIQAAEAVK SGRMRLDKGA ATIEEASKIP VGINSAGQWK VMSKEDMKKK LNLHSPDHWD TYCFAMLANY VPQDEVLSVE DEAQVDEALA WLNE
Length	494
Mol. Wt	55.605 kDa
pI	8.2 (calculated)
Extinction coefficient	95,340 - 95,965 (calc based on 16 Y, 13 W, and 5 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes References Domain 68 - 85 Predicted membrane-spanning helix. TMD predicted by TMHMM edit table

<motif_map/> Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=Phage_P1_pacB taxon=10678 </beststructure> Models View models at: PSI-PRED Genomes TO Protein (GTOP) edit table

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]