Phage N4 53:On One Page

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Gene Product(s)

Expression

Evolution

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Standard Name	53
Gene Synonym(s)	gp53 , EPNV4_gp53
Product Desc.
Product Synonyms(s)	gp53 , EPNV4_gp53
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	53
Mnemonic
Synonyms	gp53 , EPNV4_gp53
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Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
		NC_8720: 50294..47437 <gbrowseImage> name=NC_008720:47437..50294 source=bacteriophage_N4 preset=GeneLocation </gbrowseImage>	GBrowse(Bacteriophage N4)	FASTA Dump
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Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
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Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	53
Synonyms	gp53 , EPNV4_gp53
Product description
EC number (for enzymes)
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Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MGLFSSKTKI YVASSVYNLA GDIHKRPNYL KTTVIGNIVS KSDFSMGDTI TDSYLNGPGI RLRRFPGWAA TNYDPSIGIA YGNLSILSQV DPEVVKWQVP QKAGYEVQVQ SSRIGFGDFE EWADKFLYEN YPDRITEEFE IDIMDDDRIV LTATDGSELS FYPKNYSQDA MYLYVNYYYI QPTSVADPVV HPAVSVSSAD DLPSTSEWTQ VSQNHTPKSA TLKTVTHIKS VFSDGRPDEE STNTEEEQVS WTNFSDVYEK EFREPSEVGL IIIRKTIMTQ VQTGTVSTGS TTNTEVIDLG GGVTETRTTT VTTDTLGHTW SYQNTDVVTT LSAGGMPQLF IYKQNSGNAV LDALFINKTT NNRFYSFIPI RSDKNWISGS TYTLCKKAFK KATGGKISDI MDDLKKNKDI GDIQYIYAVF GCSLNSPENT AKEYIYRFFQ LVNQSMPADP NYPTMDALVE GFAQANRDFD AYQEWWESRS GNRDIPIGKP PKRPVYPTIP SKSINIRSNG GYRYNMTISW NFIEESVGSG KAFSGAKKGQ LKFAYEGTVV LMQKAVMYSE KGNDKVGFTI YRLDKITMYW QDGDNSWRKI SVYGLNHNNN VYKNKSVSIS GVDALNDDEE SGFIIPLHNN IYRSMSLVNG TQLSTACCYL VLNSYKKVKK KWYQSGIFKV VVVVVAVVVS VFFTPAAGAG VMGTAASIGA ALGFAGLAAI IVGAVANAIA AMILMSIIQT VSVSLLGDKI GIIVATIASM VAMNVGTALS TGSSMSTMLG EMMKADNIIK LTSSVGNGIS DYINASAMET VKKTEKLMAE YRDQMKTIQE KYEEMFGTEG MGYIDPMNLT NVGQQFEPLD SFLSRTLMTG HDIADMSNNM ITNFTDITLQ LDLDT
Length	885
Mol. Wt	97.869 kDa
pI	5.1 (calculated)
Extinction coefficient	137,060 - 137,560 (calc based on 44 Y, 13 W, and 4 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes References Domain 698 - 720 Predicted membrane-spanning helix. TMD predicted by TMHMM Domain 740 - 762 Predicted membrane-spanning helix. TMD predicted by TMHMM Domain 631 - 653 Predicted membrane-spanning helix. TMD predicted by TMHMM Domain 666 - 688 Predicted membrane-spanning helix. TMD predicted by TMHMM edit table

<motif_map/> Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=Phage_N4_53 taxon=10752 </beststructure> Models View models at: PSI-PRED Genomes TO Protein (GTOP) edit table

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table Expression [back to top] {{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> Overview Cellular Levels [back to top] See Help:Cellular levels Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s) edit table Notes Transcription and Transcriptional Regulation [back to top] <protect> See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki. Transcription unit(s) edit table |} </protect> Notes Translation and Regulation of Translation [back to top] <gbrowseImage> name=NC_008720:50174..50214 source=bacteriophage_N4 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus. Notes Turnover and Regulation of Turnover </protect> Notes Experimental [back to top] Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki. Allele Name Mutation Phenotype Reference edit table Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki. Type Reference Notes edit table Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. Resource Name Resource Type Description Source Notes edit table Notes Accessions Related to Phage N4 53 Expression [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table Evolution [back to top] {{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> Homologs in Other Organisms [back to top] See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki. Organism Homologs (Statistics) Comments edit table Do-It-Yourself Web Tools BLAST CDD InParanoid YOGY Notes Families [back to top] See Help:Evolution_families for help entering or editing information in this section of EcoliWiki. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]