{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Standard Name	53
Gene Synonym(s)	gp53 ^[1], EPNV4_gp53 ^[1]
Product Desc.
Product Synonyms(s)	gp53 ^[1], EPNV4_gp53 ^[1]
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
edit table

</protect></protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]

Gene

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]

<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	53
Mnemonic
Synonyms	gp53 ^[1], EPNV4_gp53 ^[1]
edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]

<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
		NC_8720: 50294..47437 <gbrowseImage> name=NC_008720:47437..50294 source=bacteriophage_N4 preset=GeneLocation </gbrowseImage>	GBrowse(Bacteriophage N4)	FASTA Dump
edit table

</protect>

Notes

Sequence Features

[back to top]

<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
edit table

</protect>

Notes

Alleles and Phenotypes

[back to top]

<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
edit table

</protect>

Notes

Genetic Interactions

[back to top]

Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]

<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
edit table

</protect>

Notes

Accessions in Other Databases

[back to top]

<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
edit table

</protect>

Notes

Links

[back to top]

Name	URL	Comments
edit table

</protect>

Product(s)

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	53
Synonyms	gp53 ^[1], EPNV4_gp53 ^[1]
Product description
EC number (for enzymes)
edit table

</protect>

Notes

Function

[back to top]

<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
edit table

</protect>

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
edit table

</protect>

Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
edit table

</protect>

Notes

Structure and Physical Properties

[back to top]

<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MGLFSSKTKI YVASSVYNLA GDIHKRPNYL KTTVIGNIVS KSDFSMGDTI TDSYLNGPGI RLRRFPGWAA TNYDPSIGIA YGNLSILSQV DPEVVKWQVP QKAGYEVQVQ SSRIGFGDFE EWADKFLYEN YPDRITEEFE IDIMDDDRIV LTATDGSELS FYPKNYSQDA MYLYVNYYYI QPTSVADPVV HPAVSVSSAD DLPSTSEWTQ VSQNHTPKSA TLKTVTHIKS VFSDGRPDEE STNTEEEQVS WTNFSDVYEK EFREPSEVGL IIIRKTIMTQ VQTGTVSTGS TTNTEVIDLG GGVTETRTTT VTTDTLGHTW SYQNTDVVTT LSAGGMPQLF IYKQNSGNAV LDALFINKTT NNRFYSFIPI RSDKNWISGS TYTLCKKAFK KATGGKISDI MDDLKKNKDI GDIQYIYAVF GCSLNSPENT AKEYIYRFFQ LVNQSMPADP NYPTMDALVE GFAQANRDFD AYQEWWESRS GNRDIPIGKP PKRPVYPTIP SKSINIRSNG GYRYNMTISW NFIEESVGSG KAFSGAKKGQ LKFAYEGTVV LMQKAVMYSE KGNDKVGFTI YRLDKITMYW QDGDNSWRKI SVYGLNHNNN VYKNKSVSIS GVDALNDDEE SGFIIPLHNN IYRSMSLVNG TQLSTACCYL VLNSYKKVKK KWYQSGIFKV VVVVVAVVVS VFFTPAAGAG VMGTAASIGA ALGFAGLAAI IVGAVANAIA AMILMSIIQT VSVSLLGDKI GIIVATIASM VAMNVGTALS TGSSMSTMLG EMMKADNIIK LTSSVGNGIS DYINASAMET VKKTEKLMAE YRDQMKTIQE KYEEMFGTEG MGYIDPMNLT NVGQQFEPLD SFLSRTLMTG HDIADMSNNM ITNFTDITLQ LDLDT
Length	885
Mol. Wt	97.869 kDa
pI	5.1 (calculated)
Extinction coefficient	137,060 - 137,560 (calc based on 44 Y, 13 W, and 4 C residues)
edit table

</protect>

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
Domain	698 - 720	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[2]
Domain	740 - 762	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[2]
Domain	631 - 653	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[2]
Domain	666 - 688	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[2]
edit table

</protect>

<motif_map/>

Click the image to view raw output from TMHMM.

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_N4_53 taxon=10752 </beststructure>

Models

View models at:

PSI-PRED
Genomes TO Protein (GTOP)

edit table

</protect>

Structure figures

</protect>

Notes

Gene Product Resources

[back to top]

<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
edit table

</protect>

Notes

Accessions in Other Databases

[back to top]

<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
edit table

</protect>

Notes

Links

[back to top]

Name	URL	Comments
edit table

</protect>

Expression

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

Cellular Levels

[back to top]

See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
edit table

Notes

Transcription and Transcriptional Regulation

[back to top]

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
edit table

</protect>

Notes

Translation and Regulation of Translation

[back to top]

<protect><gbrowseImage> name=NC_008720:50174..50214 source=bacteriophage_N4 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental

[back to top]

<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
edit table

</protect>

Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
edit table

</protect>

Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
edit table

</protect>

Notes

Accessions Related to Phage N4 53 Expression

[back to top]

<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
edit table

</protect>

Notes

Links

[back to top]

Name	URL	Comments
edit table

</protect>

Evolution

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]

<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
edit table

</protect>

Do-It-Yourself Web Tools

Notes

Families

[back to top]

<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database	Accession	Notes
edit table

</protect>

Notes

Links

[back to top]

Name	URL	Comments
edit table

</protect>

References

[back to top]

See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 NCBI: Enterobacteria phage N4, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_008720 Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content
↑ ^2.0 ^2.1 ^2.2 ^2.3 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Phage N4 53:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to Phage N4 53 Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

Categories

Navigation menu

Search