Phage N4 53:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

53

Synonyms

gp53 [1], EPNV4_gp53 [1]

Product description
EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MGLFSSKTKI YVASSVYNLA GDIHKRPNYL KTTVIGNIVS KSDFSMGDTI TDSYLNGPGI
RLRRFPGWAA TNYDPSIGIA YGNLSILSQV DPEVVKWQVP QKAGYEVQVQ SSRIGFGDFE
EWADKFLYEN YPDRITEEFE IDIMDDDRIV LTATDGSELS FYPKNYSQDA MYLYVNYYYI
QPTSVADPVV HPAVSVSSAD DLPSTSEWTQ VSQNHTPKSA TLKTVTHIKS VFSDGRPDEE
STNTEEEQVS WTNFSDVYEK EFREPSEVGL IIIRKTIMTQ VQTGTVSTGS TTNTEVIDLG
GGVTETRTTT VTTDTLGHTW SYQNTDVVTT LSAGGMPQLF IYKQNSGNAV LDALFINKTT
NNRFYSFIPI RSDKNWISGS TYTLCKKAFK KATGGKISDI MDDLKKNKDI GDIQYIYAVF
GCSLNSPENT AKEYIYRFFQ LVNQSMPADP NYPTMDALVE GFAQANRDFD AYQEWWESRS
GNRDIPIGKP PKRPVYPTIP SKSINIRSNG GYRYNMTISW NFIEESVGSG KAFSGAKKGQ
LKFAYEGTVV LMQKAVMYSE KGNDKVGFTI YRLDKITMYW QDGDNSWRKI SVYGLNHNNN
VYKNKSVSIS GVDALNDDEE SGFIIPLHNN IYRSMSLVNG TQLSTACCYL VLNSYKKVKK
KWYQSGIFKV VVVVVAVVVS VFFTPAAGAG VMGTAASIGA ALGFAGLAAI IVGAVANAIA
AMILMSIIQT VSVSLLGDKI GIIVATIASM VAMNVGTALS TGSSMSTMLG EMMKADNIIK
LTSSVGNGIS DYINASAMET VKKTEKLMAE YRDQMKTIQE KYEEMFGTEG MGYIDPMNLT
NVGQQFEPLD SFLSRTLMTG HDIADMSNNM ITNFTDITLQ LDLDT
Length

885

Mol. Wt

97.869 kDa

pI

5.1 (calculated)

Extinction coefficient

137,060 - 137,560 (calc based on 44 Y, 13 W, and 4 C residues)

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Domains/Motifs/Modification Sites

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

698 - 720

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]

Domain

740 - 762

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]

Domain

631 - 653

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]

Domain

666 - 688

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


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<motif_map/>

tmhmm.php?gene=Phage_N4_53&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
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Structures

<beststructure> gene=Phage_N4_53 taxon=10752 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 NCBI: Enterobacteria phage N4, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_008720 Cite error: Invalid <ref> tag; name "NC_008720" defined multiple times with different content
  2. ↑ 2.0 2.1 2.2 2.3 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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