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The following categories exist on the wiki, and may or may not be unused. Also see wanted categories.
- Complex:D-Tyr-tRNATyr deacylase (0 members)
- Complex:D-alanine-D-alanine ligase B (0 members)
- Complex:D-allose ABC transporter (0 members)
- Complex:D-arabinose 5-phosphate isomerase (0 members)
- Complex:DALADEHYDROG-CPLX (0 members)
- Complex:DCYSDESULF-CPLX (0 members)
- Complex:DEOA-CPLX (0 members)
- Complex:DEOD-CPLX (0 members)
- Complex:DIHYDROXYACIDDEHYDRAT-CPLX (0 members)
- Complex:DNA-binding, ATP-dependent protease La (0 members)
- Complex:DNA gyrase (0 members)
- Complex:DNA polymerase III, beta subunit (0 members)
- Complex:DNA polymerase III, core enzyme (0 members)
- Complex:DNA polymerase III, holoenzyme (0 members)
- Complex:DNA polymerase III, preinitiation complex (0 members)
- Complex:DNA polymerase III, tau subunit dimer (0 members)
- Complex:DNA polymerase III, τ subunit dimer (0 members)
- Complex:DNA polymerase V (0 members)
- Complex:DSBG-CPLX (0 members)
- Complex:DXP reductoisomerase (0 members)
- Complex:DnaA initiator-associating factor for replication initiation (0 members)
- Complex:DnaJ/DnaK/GrpE (0 members)
- Complex:DnaT (0 members)
- Complex:Dps complex; stationary phase nucleoid component that sequesters iron and protects DNA from damage (0 members)
- Complex:E1P-CPLX (0 members)
- Complex:E3-CPLX (0 members)
- Complex:EIIABCFrv (0 members)
- Complex:EIIAga (0 members)
- Complex:EIIAsc (0 members)
- Complex:EIIBCFrw (0 members)
- Complex:EIIBCGlv (0 members)
- Complex:EIIBCMalX (0 members)
- Complex:EIIBgl (0 members)
- Complex:EIIChb (0 members)
- Complex:EIIFru (0 members)
- Complex:EIIGlc (0 members)
- Complex:EIIHrsA (0 members)
- Complex:EIISga (0 members)
- Complex:EIISgc (0 members)
- Complex:EIITre (0 members)
- Complex:EcoKI restriction-modification system (0 members)
- Complex:EmrAB-TolC Multidrug Efflux Transport System (0 members)
- Complex:EmrKY-TolC Putative Drug Efflux Transport System (0 members)
- Complex:EntS-TolC Enterobactin Efflux Transport System (0 members)
- Complex:Enterobacterial Common Antigen Biosynthesis Protein Complex (0 members)
- Complex:EnvZ (0 members)
- Complex:Exonuclease VII (0 members)
- Complex:FABA-CPLX (0 members)
- Complex:FABZ-CPLX (0 members)
- Complex:FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (0 members)