rpsM:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Structures
!align=left {{table heading style}} |Structures
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<beststructure>rpsM
<beststructure>
562</beststructure>
gene=rpsM
 
taxon=562,83333
</beststructure>
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|-
!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=rpsM&sub=keywordSearc EcoliPredict]
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=rpsM&organism=562&organismtext= ModBase]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)

Revision as of 23:26, 25 August 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpsM

Synonyms

30S ribosomal subunit protein S13[1], B3298[2][1], RpsM[2][1]

Product description

30S ribosomal subunit protein S13[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S13[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0030529

ribonucleoprotein complex

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc [5]

complete

GO:0019843

rRNA binding

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699
HAMAP:MF_01315

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0006412

translation

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001892
HAMAP:MF_01315

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0005840

ribosome

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001892

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0003735

structural constituent of ribosome

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001892

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0003723

RNA binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001892
SP_KW:KW-0694

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0003676

nucleic acid binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010979

F

Seeded from EcoCyc [5]

complete

GO:0000049

tRNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0820

F

Seeded from EcoCyc [5]

complete

GO:0022626

cytosolic ribosome

C

Seeded from EcoCyc 11.1[3].

required field missing

GO:0022627

cytosolic small ribosomal subunit

PMID:4587209[7]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

GO:0000049

tRNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0820

F

Seeded from EcoCyc

complete

GO:0003676

nucleic acid binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010979

F

Seeded from EcoCyc

complete

GO:0022627

cytosolic small ribosomal subunit

PMID:4587209[7]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc

complete

GO:0030529

ribonucleoprotein complex

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc

complete

GO:0003735

structural constituent of ribosome

GO_REF:0000002
GO_REF:0000002
PMID:4587209[7]

IDA: Inferred from Direct Assay

InterPro:IPR001892
InterPro:IPR018269

F

Seeded from EcoCyc

complete

GO:0005840

ribosome

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001892
InterPro:IPR018269
SP_KW:KW-0689

C

Seeded from EcoCyc

complete

GO:0006412

translation

GO_REF:0000020
GO_REF:0000002
GO_REF:0000002
PMID:4579428[8]

IDA: Inferred from Direct Assay

HAMAP:MF_01315
InterPro:IPR001892
InterPro:IPR018269

P

Seeded from EcoCyc

complete

GO:0019843

rRNA binding

GO_REF:0000020
GO_REF:0000004

IEA: Inferred from Electronic Annotation

HAMAP:MF_01315
SP_KW:KW-0699

F

Seeded from EcoCyc

complete

GO:0006412

translation

PMID:4579428[8]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

Data in Table IV.

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0022627

cytosolic small ribosomal subunit

PMID:4587209[7]

IDA: Inferred from Direct Assay

C

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 30S ribosomal subunit

could be indirect

Protein

rpsG

PMID:16606699[9]

Experiment(s):EBI-1145459, EBI-1145603

Protein

ycgE

PMID:16606699[9]

Experiment(s):EBI-1145459

Protein

rplB

PMID:16606699[9]

Experiment(s):EBI-1145459

Protein

rpsC

PMID:16606699[9]

Experiment(s):EBI-1145459

Protein

Subunits of ribosome

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MARIAGINIP DHKHAVIALT SIYGVGKTRS KAILAAAGIA EDVKISELSE GQIDTLRDEV
AKFVVEGDLR REISMSIKRL MDLGCYRGLR HRRGLPVRGQ RTKTNARTRK GPRKPIKK
Length

118

Mol. Wt

13.099 kDa

pI

11.2 (calculated)

Extinction coefficient

2,980 - 3,105 (calc based on 2 Y, W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpsM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10912-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7S9

PFAM (EcoliWiki Page)

PFAM:PF00416

RefSeq (EcoliWiki Page)

RefSeq:NP_417757


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 6.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 Wittmann-Liebold, B (1973) Studies on the primary structure of 20 proteins from Escherichia coli ribosomes by means of an improved protein sequenator. FEBS Lett. 36 247-9 PubMed
  8. ↑ 8.0 8.1 Held, WA et al. (1973) Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components. J. Biol. Chem. 248 5720-30 PubMed
  9. ↑ 9.0 9.1 9.2 9.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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