cyoC:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Data loaded by TableEdit_Loader.
touch the Product_phys_prop_table table.
Line 652: Line 652:
|-  
|-  
|
|
 
|
|
GO:0009054
GO:0055114
|
|
electron acceptor activity
oxidation reduction
|
|
GO_REF:0000002<br />GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
|
|
InterPro:IPR014206<br />SP_KW:KW-0560
|
|
F
P
|
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
Seeded from EcoCyc
|
|
required fields missing 
complete
|-  
|-  
|
|
 
|
|
GO:0055114
GO:0009054
|
|
oxidation reduction
electron acceptor activity
|
|
GO_REF:0000002<br />GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
|
|
InterPro:IPR014206<br />SP_KW:KW-0560
|
|
P
F
|
|
Seeded from EcoCyc
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
|
complete
required fields missing 


|-class='sortbottom'
|-class='sortbottom'
Line 785: Line 785:
!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
||
22.62 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
22.622 kDa
|-
|-
!align=left {{table heading style}} |pI
!align=left {{table heading style}} |pI
||
||
7.03<ref name='LIB:EcoCyc10.6'/>
7.1 (calculated)
|-
|-
!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
41940 - 42315 (calc based on 6 Y, 6 W, and 3 C residues)  
41,940 - 42,315 (calc based on 6 Y, 6 W, and 3 C residues)


|-class='sortbottom'
|-class='sortbottom'

Revision as of 17:37, 19 June 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CyoC

Synonyms

cytochrome o ubiquinol oxidase subunit III[1], B0430[2][1], CyoC[2][1]

Product description

cytochrome bo terminal oxidase subunit III[2][3];

Component of [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]][2][3]

Cytochrome o oxidase subunit III; cytochrome bo(3) ubiquinol oxidase subunit III[4]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0009486

cytochrome bo3 ubiquinol oxidase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012141

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016491

oxidoreductase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc [5]

complete

GO:0009055

electron carrier activity

PMID:3301837[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [5]

complete

GO:0009060

aerobic respiration

PMID:2981797[8]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc [5]

complete

GO:0009486

cytochrome bo3 ubiquinol oxidase activity

PMID:1322173[9]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0015453

oxidoreduction-driven active transmembrane transporter activity

PMID:7961841[10]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [5]

complete

GO:0004129

cytochrome-c oxidase activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000298
InterPro:IPR013833

F

Seeded from EcoCyc [5]

complete

GO:0005886

plasma membrane

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

InterPro:IPR014206
SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

GO:0006123

mitochondrial electron transport, cytochrome c to oxygen

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000298

P

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000298
InterPro:IPR013833
SP_KW:KW-0472

C

Seeded from EcoCyc [5]

complete

GO:0016682

oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014206

F

Seeded from EcoCyc [5]

complete

GO:0022900

electron transport chain

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc [5]

complete

GO:0022904

respiratory electron transport chain

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013833

P

Seeded from EcoCyc [5]

complete

GO:0055114

oxidation reduction

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR014206
SP_KW:KW-0560

P

Seeded from EcoCyc [5]

complete

GO:0004129

cytochrome-c oxidase activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000298
InterPro:IPR013833

F

Seeded from EcoCyc

complete

GO:0005886

plasma membrane

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

InterPro:IPR014206
SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc

complete

GO:0006123

mitochondrial electron transport, cytochrome c to oxygen

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000298

P

Seeded from EcoCyc

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc

complete

GO:0009055

electron carrier activity

PMID:3301837[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc

complete

GO:0009060

aerobic respiration

PMID:2981797[8]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc

complete

GO:0009486

cytochrome bo3 ubiquinol oxidase activity

GO_REF:0000002
PMID:1322173[9]

IDA: Inferred from Direct Assay

InterPro:IPR012141

F

Seeded from EcoCyc

complete

GO:0015453

oxidoreduction-driven active transmembrane transporter activity

PMID:7961841[10]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000298
InterPro:IPR013833
SP_KW:KW-0472

C

Seeded from EcoCyc

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc

complete

GO:0016491

oxidoreductase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc

complete

GO:0016682

oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014206

F

Seeded from EcoCyc

complete

GO:0022900

electron transport chain

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc

complete

GO:0022904

respiratory electron transport chain

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013833

P

Seeded from EcoCyc

complete

GO:0055114

oxidation reduction

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR014206
SP_KW:KW-0560

P

Seeded from EcoCyc

complete

GO:0009054

electron acceptor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]]

could be indirect


edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

plasma membrane

C-terminus localized to the periplasm with 5 predicted transmembrane domains

Daley et al. (2005) [11]


edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MATDTLTHAT AHAHEHGHHD AGGTKIFGFW IYLMSDCILF SILFATYAVL VNGTAGGPTG
KDIFELPFVL VETFLLLFSS ITYGMAAIAM YKNNKSQVIS WLALTWLFGA GFIGMEIYEF
HHLIVNGMGP DRSGFLSAFF ALVGTHGLHV TSGLIWMAVL MVQIARRGLT STNRTRIMCL
SLFWHFLDVV WICVFTVVYL MGAM
Length

204

Mol. Wt

22.622 kDa

pI

7.1 (calculated)

Extinction coefficient

41,940 - 42,315 (calc based on 6 Y, 6 W, and 3 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Domain

181 - 203

Predicted membrane-spanning helix.

TMD predicted by TMHMM[12]

Domain

138 - 160

Predicted membrane-spanning helix.

TMD predicted by TMHMM[12]

Domain

98 - 118

Predicted membrane-spanning helix.

TMD predicted by TMHMM[12]

Domain

69 - 91

Predicted membrane-spanning helix.

TMD predicted by TMHMM[12]

Domain

27 - 49

Predicted membrane-spanning helix.

TMD predicted by TMHMM[12]

edit table

<motif_map/>

tmhmm.php?gene=cyoC&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>cyoC 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CYOC-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABJ3

PFAM (EcoliWiki Page)

PFAM:PF00510

RefSeq (EcoliWiki Page)

RefSeq:NP_414964

ModBase (EcoliWiki Page)

ModBase:P0ABJ3

PDB (EcoliWiki Page)

PDB:1FFT


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 Lorence, RM et al. (1987) Cytochrome b558 monitors the steady state redox state of the ubiquinone pool in the aerobic respiratory chain of Escherichia coli. J. Biol. Chem. 262 10532-6 PubMed
  8. ↑ 8.0 8.1 Au, DC et al. (1985) Isolation and characterization of an Escherichia coli mutant lacking the cytochrome o terminal oxidase. J. Bacteriol. 161 123-7 PubMed
  9. ↑ 9.0 9.1 Minghetti, KC et al. (1992) Modified, large-scale purification of the cytochrome o complex (bo-type oxidase) of Escherichia coli yields a two heme/one copper terminal oxidase with high specific activity. Biochemistry 31 6917-24 PubMed
  10. ↑ 10.0 10.1 Welter, R et al. (1994) Identification of the ubiquinol-binding site in the cytochrome bo3-ubiquinol oxidase of Escherichia coli. J. Biol. Chem. 269 28834-8 PubMed
  11. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  12. ↑ 12.0 12.1 12.2 12.3 12.4 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

[back to top]


[[Category:Complex:cytochrome bo terminal oxidase]]

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=cyoC:Gene_Product(s)&oldid=883724"