atpE:Gene Product(s): Difference between revisions

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpE

Synonyms

F0 sector of membrane-bound ATP synthase, subunit c[1], B3737[2][1], UncE[2][1], PapH[2][1], AtpE[2][1], dicyclohexylcarbodiimide-binding protein[2][1], lipid-binding protein[2][1], c chain[2][1]

Product description

ATP synthase, F0 complex, c subunit[2][3];

Component of c subunit complex[2][3]; ATP synthase, F0 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit c, membrane-bound, F0 sector; DCCD-binding[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006811

ion transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0406

P

Seeded from EcoCyc [5]

complete

GO:0008289

lipid binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0446

F

Seeded from EcoCyc [5]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0016469

proton-transporting two-sector ATPase complex

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454
InterPro:IPR002379
InterPro:IPR005953

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0016021

integral to membrane

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR005953
SP_KW:KW-0812

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0015078

hydrogen ion transmembrane transporter activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0375

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0015986

ATP synthesis coupled proton transport

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454
InterPro:IPR002379
InterPro:IPR005953

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0015992

proton transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0375

P

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000454
InterPro:IPR002379
SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0138

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454
InterPro:IPR002379

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454
InterPro:IPR002379

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0016021

integral to membrane

PMID:2863271[7]

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

GO:0015986

ATP synthesis coupled proton transport

PMID:2863271[7]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 11.1[3].

complete

Contributes to

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

PMID:2863271[7]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

PMID:6460031[8]

IMP: Inferred from Mutant Phenotype

C

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of c subunit complex

could be indirect

Protein

Subunits of ATP synthase, F0 complex

could be indirect

Protein

Subunits of ATP synthase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

plasma membrane

C-terminus localized to the periplasm with 2 predicted transmembrane domains

Daley et al. (2005) [9]

plasma membrane

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MENLNMDLLY MAAAVMMGLA AIGAAIGIGI LGGKFLEGAA RQPDLIPLLR TQFFIVMGLV
DAIPMIAVGL GLYVMFAVA
Mol. Wt

8.26 kDa (calc) [2]

pI

4.69[2]

Extinction coefficient

2980 (calc based on 2 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Modification Site

1

N-formylmethionine

UniProt:P68699

Domain

10 - 32

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

Domain

53 - 75

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

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tmhmm.php?gene=atpE&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>atpE 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:ATPE-MONOMER

UniProt (EcoliWiki Page)

UniProt:P68699

PFAM (EcoliWiki Page)

PFAM:PF00137

RefSeq (EcoliWiki Page)

RefSeq:NP_418193

ModBase (EcoliWiki Page)

ModBase:P68699

PDB (EcoliWiki Page)

PDB:1A91


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 Aris, JP et al. (1985) The Fo subunits of the Escherichia coli F1Fo-ATP synthase are sufficient to form a functional proton pore. J. Biol. Chem. 260 11207-15 PubMed
  8. ↑ Foster, DL & Fillingame, RH (1982) Stoichiometry of subunits in the H+-ATPase complex of Escherichia coli. J. Biol. Chem. 257 2009-15 PubMed
  9. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  10. ↑ 10.0 10.1 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

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