ftsK:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
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''ftsK''  
''ftsK''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK0881, b0890, JW0873, dinH''<ref name='LIB:Riley_2006'/>
''ECK0881, b0890, JW0873, dinH''<ref name='LIB:Riley_2006'/>
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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{{GBrowseFastaLink|ecoli|NC_000913|932447|936436|FASTA Dump}}
{{GBrowseFastaLink|ecoli|NC_000913|932447|936436|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6464 EcoCyc Sequence Dump]  
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W3110
W3110
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|933646|937635|FASTA Dump}}  
{{GBrowseFastaLink|ecoli_W3110|AC_000091|933646|937635|FASTA Dump}}  
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====Notes====
====Notes====
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|[[PMID:15522074]]<ref name=PMID:15522074/>
[[PMID:15522074]]<ref name=PMID:15522074/>
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[[PMID:15522074]]<ref name=PMID:15522074/>
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Barre
Barre
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Barre
Barre
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Barre
Barre
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Barre
Barre
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only expresses the NTD due to a Cm resistance cassette at nt 678 of ''ftsK''
only expresses the NTD due to a Cm resistance cassette at nt 678 of ''ftsK''
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|[[PMID:9721304]]<ref name=PMID:9721304/>
[[PMID:9721304]]<ref name=PMID:9721304/>
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Donachie
Donachie
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temperature sensitive late stage block in division, but does not affect chromosome replication or segregation
temperature sensitive late stage block in division, but does not affect chromosome replication or segregation
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|[[PMID:7592387]]<ref name=PMID:7592387/>
[[PMID:7592387]]<ref name=PMID:7592387/>
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Donachie
Donachie
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JW0873
JW0873
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:Clone OK
Status:Clone OK
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Primer 2:CCGTCAAACGGCGGTGGGGCCAG  
Primer 2:CCGTCAAACGGCGGTGGGGCCAG  
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zbh-29::Tn10
zbh-29::Tn10
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CAG18493 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39400 CGSC7353]<ref name='LIB:cgsc'/>
CAG18493 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39400 CGSC7353]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:zbi-29::Tn10  
 
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zca-1230::Tn10
zca-1230::Tn10
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CAG18478 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39407 CGSC7356]<ref name='LIB:cgsc'/>
CAG18478 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39407 CGSC7356]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 61% <ref name='LIB:Nichols_linked_Tn'/>
est. P1 cotransduction: 61% <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:zbj-1230::Tn10


Synonyms:zbj-1230::Tn10
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003027&formSubmitReturn=1 ASAP:ABE-0003027]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003027&formSubmitReturn=1 ASAP:ABE-0003027]
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==References==
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__NOTOC__
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Revision as of 18:44, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ftsK

Mnemonic
Synonyms

ECK0881, b0890, JW0873, dinH[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

20.1 minutes 

MG1655: 932447..936436
gbrowse_img.php?coord=931447..937436&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 933646..937635
gbrowse_img.php?coord=932646..938635&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

deltaLC

PMID:15522074[2]

Carries a deletion of FtsK L and FtsK C

NC

PMID:15522074[2]

Barre

Deletion of the FtsK Linker

NL hi C

PMID:15522074[2]

Barre

Carries swaps b/t E.coli and H. influenzae FtsK regions

ftsK A

K997A

PMID:15522074[2]

Barre

Carries a single point mutation in the walker A motif of FtsK C

NLC hi

PMID:15522074[2]

Barre

Carries swaps b/t E.coli and H.influenzae FtsK regions

ftsk::cat1

only expresses the NTD due to a Cm resistance cassette at nt 678 of ftsK

PMID:9721304[3]

Donachie Sheratt

ftsk44

Growth Phenotype

temperature sensitive late stage block in division, but does not affect chromosome replication or segregation

PMID:7592387[4]

Donachie


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Notes

Deletions that leave the membrane segments intact are viable.[5]

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0873

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCAGCCAGGAATACATTGAAGA

Primer 2:CCGTCAAACGGCGGTGGGGCCAG

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[7]

est. P1 cotransduction: % [8]nnSynonyms:zbi-29::Tn10

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[7]

est. P1 cotransduction: 61% [8]nnSynonyms:zbj-1230::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6464

EchoBASE (EcoliWiki Page)

EchoBASE:EB3016

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0890

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1027

EcoGene (EcoliWiki Page)

EcoGene:EG13226

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:FTSK

ASAP (EcoliWikiPage)

ASAP:ABE-0003027


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 Bigot, S et al. (2004) FtsK activities in Xer recombination, DNA mobilization and cell division involve overlapping and separate domains of the protein. Mol. Microbiol. 54 876-86 PubMed
  3. ↑ Draper, GC et al. (1998) Only the N-terminal domain of FtsK functions in cell division. J. Bacteriol. 180 4621-7 PubMed
  4. ↑ Begg, KJ et al. (1995) A new Escherichia coli cell division gene, ftsK. J. Bacteriol. 177 6211-22 PubMed
  5. ↑ Draper, GC et al. (1998) Only the N-terminal domain of FtsK functions in cell division. J. Bacteriol. 180 4621-7 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


Categories

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