gltA:Gene Product(s): Difference between revisions

Standard name	GltA product
Synonyms	citrate synthase product^[1], B0720 product^[2]^[1], IcdB product^[2]^[1], GltA product^[2]^[1]
Product description	citrate synthase monomer^[2]^[3]
EC number (for enzymes)	2.3.3.1^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005624	membrane fraction	PMID:16858726^[4]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0003824	catalytic activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0021	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0006099	tricarboxylic acid cycle	PMID:13152052^[6]	IDA: Inferred from Direct Assay		P	Seeded from EcoCyc 11.1^[3].	complete
	GO:0009061	anaerobic respiration				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0003878	ATP citrate synthase activity				F		required field missing
	GO:0004108	citrate (Si)-synthase activity	GO_REF:0000002 GO_REF:0000003	IEA: Inferred from Electronic Annotation	InterPro:IPR010953 EC:2.3.3.1	F	Seeded from EcoCyc 12.5 ^[5]	complete
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MADTKAKLTL NGDTAVELDV LKGTLGQDVI DIRTLGSKGV FTFDPGFTST ASCESKITFI DGDEGILLHR GFPIDQLATD SNYLEVCYIL LNGEKPTQEQ YDEFKTTVTR HTMIHEQITR LFHAFRRDSH PMAVMCGITG ALAAFYHDSL DVNNPRHREI AAFRLLSKMP TMAAMCYKYS IGQPFVYPRN DLSYAGNFLN MMFSTPCEPY EVNPILERAM DRILILHADH EQNASTSTVR TAGSSGANPF ACIAAGIASL WGPAHGGANE AALKMLEEIS SVKHIPEFVR RAKDKNDSFR LMGFGHRVYK NYDPRATVMR ETCHEVLKEL GTKDDLLEVA MELENIALND PYFIEKKLYP NVDFYSGIIL KAMGIPSSMF TVIFAMARTV GWIAHWSEMH SDGMKIARPR QLYTGYEKRD FKSDIKR
Mol. Wt	48.01 kDa (calc) ^[2]
pI	6.62^[2]
Extinction coefficient	40340 - 41215 (calc based on 16 Y, 3 W, and 7 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structures

Models

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:CITSYN-MONOMER
UniProt (EcoliWiki Page)	UniProt:P0ABH7
PFAM (EcoliWiki Page)	PFAM:PF00285
RefSeq (EcoliWiki Page)	RefSeq:NP_415248
ModBase (EcoliWiki Page)	ModBase:P0ABH7
PDB (EcoliWiki Page)	PDB:1K3P
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ ^5.0 ^5.1 ^5.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ SWIM, HE & KRAMPITZ, LO (1954) Acetic acid oxidation by Escherichia coli; evidence for the occurrence of a tricarboxylic acid cycle. J. Bacteriol. 67 419-25 PubMed

@@ Line 92: / Line 92: @@
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 C
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
+|-
+|
+|
+[[Category:GO:0003824_!_catalytic_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003824_!_catalytic_activity GO:0003824]
+|
+catalytic activity
+|
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+|
+IEA: Inferred from Electronic Annotation
+|
+[http://www.uniprot.org/keywords/KW-0021 SP_KW:KW-0021]
+|
+F
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
@@ Line 157: / Line 176: @@
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-[[Category:GO:0003824_!_catalytic_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003824_!_catalytic_activity GO:0003824]
+[[Category:GO:0004108_!_citrate_(Si)-synthase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004108_!_citrate_(Si)-synthase_activity GO:0004108]
 |
-catalytic activity
+citrate (Si)-synthase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000003 GO_REF:0000003]
 |
 IEA: Inferred from Electronic Annotation
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-[http://www.uniprot.org/keywords/KW-0021 SP_KW:KW-0021]
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR010953 InterPro:IPR010953]<br />EC:2.3.3.1
 |
 F

gltA:Gene Product(s): Difference between revisions

Revision as of 03:07, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

gltA:Gene Product(s): Difference between revisions

Revision as of 03:07, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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