cyoC:Gene Product(s): Difference between revisions

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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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[[Category:GO:0016021_!_integral_to_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016021_!_integral_to_membrane GO:0016021]
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integral to membrane
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0812 SP_KW:KW-0812]
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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[[Category:GO:0009486_!_cytochrome_bo3_ubiquinol_oxidase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009486_!_cytochrome_bo3_ubiquinol_oxidase_activity GO:0009486]
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cytochrome bo3 ubiquinol oxidase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012141 InterPro:IPR012141]
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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[[Category:GO:0006810_!_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006810_!_transport GO:0006810]
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transport
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0813 SP_KW:KW-0813]
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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required fields missing   
required fields missing   
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[[Category:GO:0016491_!_oxidoreductase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016491_!_oxidoreductase_activity GO:0016491]
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oxidoreductase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0560 SP_KW:KW-0560]
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete


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Revision as of 19:13, 17 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

CyoC product

Synonyms

cytochrome o ubiquinol oxidase subunit III product[1], B0430 product[2][1], CyoC product[2][1]

Product description

cytochrome bo terminal oxidase subunit III[2][3];

Component of ; [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]][2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0009055

electron carrier activity

PMID:3301837[4]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0009060

aerobic respiration

PMID:2981797[6]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0009486

cytochrome bo3 ubiquinol oxidase activity

PMID:1322173[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0015453

oxidoreduction-driven active transmembrane transporter activity

PMID:7961841[8]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0009054

electron acceptor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes

Protein

Subunits of [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]]

could be indirect

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

plasma membrane

C-terminus localized to the periplasm with 5 predicted transmembrane domains

Daley et al. (2005) [9]


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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MATDTLTHAT AHAHEHGHHD AGGTKIFGFW IYLMSDCILF SILFATYAVL VNGTAGGPTG
KDIFELPFVL VETFLLLFSS ITYGMAAIAM YKNNKSQVIS WLALTWLFGA GFIGMEIYEF
HHLIVNGMGP DRSGFLSAFF ALVGTHGLHV TSGLIWMAVL MVQIARRGLT STNRTRIMCL
SLFWHFLDVV WICVFTVVYL MGAM
Mol. Wt

22.62 kDa (calc) [2]

pI

7.03[2]

Extinction coefficient

41940 - 42315 (calc based on 6 Y, 6 W, and 3 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes

Domain

181 - 203

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

Domain

138 - 160

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

Domain

98 - 118

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

Domain

69 - 91

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

Domain

27 - 49

Predicted membrane-spanning helix.

TMD predicted by TMHMM[10]

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

tmhmm.php?gene=cyoC&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure

Structures

<beststructure>cyoC 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CYOC-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABJ3

PFAM (EcoliWiki Page)

PFAM:PF00510

RefSeq (EcoliWiki Page)

RefSeq:NP_414964

ModBase (EcoliWiki Page)

ModBase:P0ABJ3

PDB (EcoliWiki Page)

PDB:1FFT


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Lorence, RM et al. (1987) Cytochrome b558 monitors the steady state redox state of the ubiquinone pool in the aerobic respiratory chain of Escherichia coli. J. Biol. Chem. 262 10532-6 PubMed
  5. ↑ 5.0 5.1 5.2 5.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ Au, DC et al. (1985) Isolation and characterization of an Escherichia coli mutant lacking the cytochrome o terminal oxidase. J. Bacteriol. 161 123-7 PubMed
  7. ↑ Minghetti, KC et al. (1992) Modified, large-scale purification of the cytochrome o complex (bo-type oxidase) of Escherichia coli yields a two heme/one copper terminal oxidase with high specific activity. Biochemistry 31 6917-24 PubMed
  8. ↑ Welter, R et al. (1994) Identification of the ubiquinol-binding site in the cytochrome bo3-ubiquinol oxidase of Escherichia coli. J. Biol. Chem. 269 28834-8 PubMed
  9. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  10. ↑ 10.0 10.1 10.2 10.3 10.4 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

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[[Category:Complex:cytochrome bo terminal oxidase]]

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