gltA:Gene Product(s): Difference between revisions
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P | P | ||
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | |||
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complete | |||
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[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740] | |||
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transferase activity | |||
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GO_REF:0000004 | |||
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IEA: Inferred from Electronic Annotation | |||
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SP_KW:KW-0808 | |||
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F | |||
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | ||
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[[Category:GO: | [[Category:GO:0046912_!_transferase_activity,_transferring_acyl_groups,_acyl_groups_converted_into_alkyl_on_transfer]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0046912_!_transferase_activity,_transferring_acyl_groups,_acyl_groups_converted_into_alkyl_on_transfer GO:0046912] | ||
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transferase activity | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | ||
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GO_REF: | GO_REF:0000002 | ||
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IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
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InterPro:IPR002020 | |||
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F | F | ||
Revision as of 21:23, 2 October 2008
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
GltA product |
|---|---|
| Synonyms |
citrate synthase product[1], B0720 product[2][1], IcdB product[2][1], GltA product[2][1] |
| Product description | |
| EC number (for enzymes) | |
| edit table | |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003824 |
catalytic activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0004108 |
citrate (Si)-synthase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0004108 |
citrate (Si)-synthase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0005624 |
membrane fraction |
IDA: Inferred from Direct Assay |
C |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006099 |
tricarboxylic acid cycle |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0016740 |
transferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006099 |
tricarboxylic acid cycle |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc 11.1[3]. |
complete | |||
| GO:0009061 |
anaerobic respiration |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0003878 |
ATP citrate synthase activity |
F |
required field missing | |||||
| GO:0046912 |
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| edit table |
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MADTKAKLTL NGDTAVELDV LKGTLGQDVI DIRTLGSKGV FTFDPGFTST ASCESKITFI DGDEGILLHR GFPIDQLATD SNYLEVCYIL LNGEKPTQEQ YDEFKTTVTR HTMIHEQITR LFHAFRRDSH PMAVMCGITG ALAAFYHDSL DVNNPRHREI AAFRLLSKMP TMAAMCYKYS IGQPFVYPRN DLSYAGNFLN MMFSTPCEPY EVNPILERAM DRILILHADH EQNASTSTVR TAGSSGANPF ACIAAGIASL WGPAHGGANE AALKMLEEIS SVKHIPEFVR RAKDKNDSFR LMGFGHRVYK NYDPRATVMR ETCHEVLKEL GTKDDLLEVA MELENIALND PYFIEKKLYP NVDFYSGIIL KAMGIPSSMF TVIFAMARTV GWIAHWSEMH SDGMKIARPR QLYTGYEKRD FKSDIKR |
|---|---|
| Mol. Wt |
48.01 kDa (calc) [2] |
| pI |
6.62[2] |
| Extinction coefficient |
40340 - 41215 (calc based on 16 Y, 3 W, and 7 C residues) |
| edit table | |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structure Type | Organism | Accession | Residues covered | Notes |
|---|---|---|---|---|
|
X-RAY DIFFRACTION |
Escherichia coli |
1OWC Three Dimensional Structure Analysis Of The R109L Variant of the Type II Citrate Synthase From E. Coli |
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|
X-RAY DIFFRACTION |
Escherichia coli |
1OWB Three Dimensional Structure Analysis Of The Variant R109L NADH Complex of Type II Citrate Synthase From E. Coli |
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|
X-RAY DIFFRACTION |
Escherichia coli |
1NXG The F383A variant of type II Citrate Synthase complexed with NADH |
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|
X-RAY DIFFRACTION |
Escherichia coli |
1NXE A Novel NADH Allosteric Regulator Site is Found on the Surface of the Hexameric Type II Phe383Ala Variant of Citrate Synthase |
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|
X-RAY DIFFRACTION |
Escherichia coli |
1K3P Three Dimensional Structure Analysis of the Type II Citrate Synthase from E.coli |
||
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
- ↑ SWIM, HE & KRAMPITZ, LO (1954) Acetic acid oxidation by Escherichia coli; evidence for the occurrence of a tricarboxylic acid cycle. J. Bacteriol. 67 419-25 PubMed
Categories
- GO:0003824 ! catalytic activity
- GO:0004108 ! citrate (Si)-synthase activity
- GO:0005624 ! membrane fraction
- GO:0005737 ! cytoplasm
- GO:0006099 ! tricarboxylic acid cycle
- GO:0016740 ! transferase activity
- GO:0009061 ! anaerobic respiration
- GO:0003878 ! ATP citrate synthase activity
- GO:0046912 ! transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
- Proteins
- Products with structures in PDB