dnaA:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Data loaded by TableEdit_Loader.
Data loaded by TableEdit_Loader.
Line 354: Line 354:
|
|
InterPro:IPR013159
InterPro:IPR013159
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006275_!_regulation_of_DNA_replication]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006275_!_regulation_of_DNA_replication GO:0006275]
|
regulation of DNA replication
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00377
|
|
P
P
Line 444: Line 463:
regulation of DNA replication
regulation of DNA replication
|
|
GO_REF:0000020
GO_REF:0000002
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
HAMAP:MF_00377
InterPro:IPR001957
|
|
P
P

Revision as of 20:17, 2 October 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

DnaA product

Synonyms

chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator product[1], B3702 product[2][1], DnaA product[2][1], DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator product[2][1]

Product description

DnaA transcriptional dual regulator[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0000166

nucleotide binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003677

DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003677

DNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003688

DNA replication origin binding

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003688

DNA replication origin binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005524

ATP binding

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013159

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005524

ATP binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0006260

DNA replication

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006270

DNA replication initiation

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006270

DNA replication initiation

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006270

DNA replication initiation

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013159

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006275

regulation of DNA replication

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006261

DNA-dependent DNA replication

PMID:2839499[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

complete

GO:0006350

transcription

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016564

transcription repressor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006275

regulation of DNA replication

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

P

Seeded from EcoCyc 12.5 [4]

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes
edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MSLSLWQQCL ARLQDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN
GLLTSFCGAD APQLRFEVGT KPVTQTPQAA VTSNVAAPAQ VAQTQPQRAA PSTRSGWDNV
PAPAEPTYRS NVNVKHTFDN FVEGKSNQLA RAAARQVADN PGGAYNPLFL YGGTGLGKTH
LLHAVGNGIM ARKPNAKVVY MHSERFVQDM VKALQNNAIE EFKRYYRSVD ALLIDDIQFF
ANKERSQEEF FHTFNALLEG NQQIILTSDR YPKEINGVED RLKSRFGWGL TVAIEPPELE
TRVAILMKKA DENDIRLPGE VAFFIAKRLR SNVRELEGAL NRVIANANFT GRAITIDFVR
EALRDLLALQ EKLVTIDNIQ KTVAEYYKIK VADLLSKRRS RSVARPRQMA MALAKELTNH
SLPEIGDAFG GRDHTTVLHA CRKIEQLREE SHDIKEDFSN LIRTLSS
Mol. Wt

52.55 kDa (calc) [2]

pI

8.67[2]

Extinction coefficient

43890 - 44265 (calc based on 11 Y, 5 W, and 3 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structure Type Organism Accession Residues covered Notes
edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PD03831

SwissModel (EcoliWiki Page)

SwissModel:P03004

UniProt (EcoliWiki Page)

UniProt:P03004

RefSeq (EcoliWiki Page)

RefSeq:NP_418157

ModBase (EcoliWiki Page)

ModBase:P03004

edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 4.13 4.14 4.15 4.16 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Hwang, DS & Kaguni, JM (1988) Purification and characterization of the dnaA46 gene product. J. Biol. Chem. 263 10625-32 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=dnaA:Gene_Product(s)&oldid=521372"