parC:Gene Product(s): Difference between revisions

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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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[[Category:GO:0005737_!_cytoplasm]][[:Category:GO:0005737_!_cytoplasm|GO:0005737]]  
[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]  
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cytoplasm
cytoplasm
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complete  
complete  
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[[Category:GO:0006261_!_DNA-dependent_DNA_replication]][[:Category:GO:0006261_!_DNA-dependent_DNA_replication|GO:0006261]]  
[[Category:GO:0006261_!_DNA-dependent_DNA_replication]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006261_!_DNA-dependent_DNA_replication GO:0006261]  
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DNA-dependent DNA replication
DNA-dependent DNA replication
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complete  
complete  
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[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][[:Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity|GO:0003918]]
[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity GO:0003918]
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DNA topoisomerase (ATP-hydrolyzing) activity
DNA topoisomerase (ATP-hydrolyzing) activity
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required field missing  
required field missing  
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[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
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DNA_binding
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
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IEA: Inferred from Electronic Annotation
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InterPro:IPR002205
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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Revision as of 03:59, 30 September 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

ParC product

Synonyms

DNA topoisomerase IV, subunit A product[1], B3019 product[2][1], ParC product[2][1]

Product description

topoisomerase IV subunit A[2][3];

Component of ; dimer of topoisomerase IV subunit A[3]; topoisomerase IV[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

PMID:12535532[4]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc 11.1[3].

complete

GO:0006261

DNA-dependent DNA replication

PMID:2170028[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

IDA: Inferred from Direct Assay

F

required field missing

GO:0003677

DNA_binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002205

F

Seeded from EcoCyc 12.5 [6]


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Interactions

Partner Type Partner Notes

Protein

Subunits of dimer of topoisomerase IV subunit A

could be indirect

Protein

Subunits of topoisomerase IV

could be indirect

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Notes

Localization

Compartment Description Evidence Notes

cytoplasm

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MSDMAERLAL HEFTENAYLN YSMYVIMDRA LPFIGDGLKP VQRRIVYAMS ELGLNASAKF
KKSARTVGDV LGKYHPHGDS ACYEAMVLMA QPFSYRYPLV DGQGNWGAPD DPKSFAAMRY
TESRLSKYSE LLLSELGQGT ADWVPNFDGT LQEPKMLPAR LPNILLNGTT GIAVGMATDI
PPHNLREVAQ AAIALIDQPK TTLDQLLDIV QGPDYPTEAE IITSRAEIRK IYENGRGSVR
MRAVWKKEDG AVVISALPHQ VSGARVLEQI AAQMRNKKLP MVDDLRDESD HENPTRLVIV
PRSNRVDMDQ VMNHLFATTD LEKSYRINLN MIGLDGRPAV KNLLEILSEW LVFRRDTVRR
RLNYRLEKVL KRLHILEGLL VAFLNIDEVI EIIRNEDEPK PALMSRFGLT ETQAEAILEL
KLRHLAKLEE MKIRGEQSEL EKERDQLQGI LASERKMNNL LKKELQADAQ AYGDDRRSPL
QEREEAKAMS EHDMLPSEPV TIVLSQMGWV RSAKGHDIDA PGLNYKAGDS FKAAVKGKSN
QPVVFVDSTG RSYAIDPITL PSARGQGEPL TGKLTLPPGA TVDHMLMESD DQKLLMASDA
GYGFVCTFND LVARNRAGKA LITLPENAHV MPPVVIEDAS DMLLAITQAG RMLMFPVSDL
PQLSKGKGNK IINIPSAEAA RGEDGLAQLY VLPPQSTLTI HVGKRKIKLR PEELQKVTGE
RGRRGTLMRG LQRIDRVEID SPRRASSGDS EE
Mol. Wt

83.83 kDa (calc) [2]

pI
Extinction coefficient

55810 - 56060 (calc based on 19 Y, 5 W, and 2 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes

X-RAY DIFFRACTION

Escherichia coli

1ZVU Structure of the full-length E. coli ParC subunit

X-RAY DIFFRACTION

Escherichia coli

1ZVT Structure of the E. coli ParC C-terminal domain

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10686-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AFI2

UniProt (EcoliWiki Page)

UniProt:P0AFI2

PFAM (EcoliWiki Page)

PFAM:PF00521

RefSeq (EcoliWiki Page)

RefSeq:NP_417491

ModBase (EcoliWiki Page)

ModBase:P0AFI2

PDB (EcoliWiki Page)

PDB:1ZVT

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Espeli, O et al. (2003) Temporal regulation of topoisomerase IV activity in E. coli. Mol. Cell 11 189-201 PubMed
  5. ↑ Kato, J et al. (1990) New topoisomerase essential for chromosome segregation in E. coli. Cell 63 393-404 PubMed
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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