dnaA:Gene Product(s): Difference between revisions

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F
F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0006260_!_DNA_replication]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006260_!_DNA_replication GO:0006260]
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DNA_replication
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0235
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0006260_!_DNA_replication]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006260_!_DNA_replication GO:0006260]
[[Category:GO:0006270_!_DNA_replication_initiation]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006270_!_DNA_replication_initiation GO:0006270]
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DNA_replication
DNA_replication_initiation
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000020 GO_REF:0000020]<br />
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0235
HAMAP:MF_00377
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P
P

Revision as of 23:48, 29 September 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

DnaA product

Synonyms

chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator product[1], B3702 product[2][1], DnaA product[2][1], DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator product[2][1]

Product description

DnaA transcriptional dual regulator[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005524

ATP_binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

F

Seeded from EcoCyc 12.5 [4]

GO:0005524

ATP_binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013159

F

Seeded from EcoCyc 12.5 [4]

GO:0005524

ATP_binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc 12.5 [4]

GO:0006260

DNA_replication

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc 12.5 [4]

GO:0003688

DNA_replication_origin_binding

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

F

Seeded from EcoCyc 12.5 [4]

GO:0003688

DNA_replication_origin_binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

F

Seeded from EcoCyc 12.5 [4]

GO:0005524

ATP_binding

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

F

Seeded from EcoCyc 12.5 [4]

GO:0000166

nucleotide_binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc 12.5 [4]

GO:0000166

nucleotide_binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc 12.5 [4]

GO:0003677

DNA_binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001957

F

Seeded from EcoCyc 12.5 [4]

GO:0003677

DNA_binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc 12.5 [4]

GO:0006261

DNA-dependent DNA replication

PMID:2839499[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

GO:0006350

transcription

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016564

transcription repressor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006270

DNA_replication_initiation

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00377

P

Seeded from EcoCyc 12.5 [4]


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Interactions

Partner Type Partner Notes
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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MSLSLWQQCL ARLQDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN
GLLTSFCGAD APQLRFEVGT KPVTQTPQAA VTSNVAAPAQ VAQTQPQRAA PSTRSGWDNV
PAPAEPTYRS NVNVKHTFDN FVEGKSNQLA RAAARQVADN PGGAYNPLFL YGGTGLGKTH
LLHAVGNGIM ARKPNAKVVY MHSERFVQDM VKALQNNAIE EFKRYYRSVD ALLIDDIQFF
ANKERSQEEF FHTFNALLEG NQQIILTSDR YPKEINGVED RLKSRFGWGL TVAIEPPELE
TRVAILMKKA DENDIRLPGE VAFFIAKRLR SNVRELEGAL NRVIANANFT GRAITIDFVR
EALRDLLALQ EKLVTIDNIQ KTVAEYYKIK VADLLSKRRS RSVARPRQMA MALAKELTNH
SLPEIGDAFG GRDHTTVLHA CRKIEQLREE SHDIKEDFSN LIRTLSS
Mol. Wt

52.55 kDa (calc) [2]

pI

8.67[2]

Extinction coefficient

43890 - 44265 (calc based on 11 Y, 5 W, and 3 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes
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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PD03831

SwissModel (EcoliWiki Page)

SwissModel:P03004

UniProt (EcoliWiki Page)

UniProt:P03004

RefSeq (EcoliWiki Page)

RefSeq:NP_418157

ModBase (EcoliWiki Page)

ModBase:P03004

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Hwang, DS & Kaguni, JM (1988) Purification and characterization of the dnaA46 gene product. J. Biol. Chem. 263 10625-32 PubMed


Categories

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